Analysis of interatomic Contacts of Structural Units in PDB entry:
3RE9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RE9 entry

There is 1 chain in PDB entry 3RE9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 66HIS 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 3RE9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
67 77Right-handed alpha
Helix 2
2
A
85 105Right-handed alpha
Helix 3
3
A
115 118Right-handed 310
Helix 4
4
A
128 135Right-handed alpha
Helix 5
5
A
165 173Right-handed 310
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There is 1 sheet ( A) in PDB entry 3RE9.

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 114first strand
Strand 2
A
119 125anti-parallel
Strand 3
A
136 138parallel
Strand 4
A
151 156anti-parallel
Strand 5
A
213 221parallel
Strand 6
A
228 237anti-parallel
Strand 7
A
187 198anti-parallel
Strand 8
A
178 182anti-parallel
Strand 9
A
108 114anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il