Analysis of interatomic Contacts of Structural Units in PDB entry:
3RF6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RF6 entry

There are 2 chains in PDB entry 3RF6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 13ALA 352
B
 MET 1ALA 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 3RF6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 44Right-handed alpha
Helix 2
2
A
58 70Right-handed alpha
Helix 3
3
A
75 77Right-handed 310
Helix 4
4
A
83 90Right-handed 310
Helix 5
5
A
103 112Right-handed alpha
Helix 6
6
A
119 126Right-handed alpha
Helix 7
7
A
127 130Right-handed 310
Helix 8
8
A
136 144Right-handed alpha
Helix 9
9
A
166 179Right-handed alpha
Helix 10
10
A
219 236Right-handed alpha
Helix 11
11
A
248 268Right-handed alpha
Helix 12
12
A
302 311Right-handed alpha
Helix 13
13
A
339 352Right-handed alpha
Helix 14
14
B
33 44Right-handed alpha
Helix 15
15
B
58 71Right-handed alpha
Helix 16
16
B
75 77Right-handed 310
Helix 17
17
B
83 90Right-handed 310
Helix 18
18
B
103 112Right-handed alpha
Helix 19
19
B
119 126Right-handed alpha
Helix 20
20
B
127 130Right-handed 310
Helix 21
21
B
136 144Right-handed alpha
Helix 22
22
B
166 179Right-handed alpha
Helix 23
23
B
219 236Right-handed alpha
Helix 24
24
B
248 267Right-handed alpha
Helix 25
25
B
302 311Right-handed alpha
Helix 26
26
B
339 352Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3RF6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
48 51parallel
Strand 3
A
14 18parallel
Strand 4
A
292 297parallel
Strand 5
A
313 317parallel
Strand 6
A
335 337parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
29 30anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
95 99parallel
Strand 3
A
157 160parallel
Strand 4
A
200 202parallel
Strand 5
A
242 243parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
217 218anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 80first strand
Strand 2
B
48 51parallel
Strand 3
B
13 18parallel
Strand 4
B
290 297parallel
Strand 5
B
313 317parallel
Strand 6
B
335 337parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
29 30anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 118first strand
Strand 2
B
95 99parallel
Strand 3
B
157 160parallel
Strand 4
B
200 202parallel
Strand 5
B
242 243parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 209first strand
Strand 2
B
217 218anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il