Analysis of interatomic Contacts of Structural Units in PDB entry:
3RG8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3RG8 entry

There are 8 chains in PDB entry 3RG8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 2	LYS 156
B	ARG 2	LEU 157
C	ARG 2	ARG 159
D	ARG 2	LEU 157
E	ARG 2	LEU 157
F	ARG 2	LEU 157
G	MET 1	ARG 159
H	ARG 2	LEU 157

There are 64 helices in PDB entry 3RG8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	11	13	Right-handed 310
Helix 2	2	A	14	28	Right-handed alpha
Helix 3	3	A	42	55	Right-handed alpha
Helix 4	4	A	71	80	Right-handed alpha
Helix 5	5	A	92	96	Right-handed 310
Helix 6	6	A	97	104	Right-handed alpha
Helix 7	7	A	116	129	Right-handed alpha
Helix 8	8	A	132	156	Right-handed alpha
Helix 9	9	B	11	13	Right-handed 310
Helix 10	10	B	14	28	Right-handed alpha
Helix 11	11	B	42	55	Right-handed alpha
Helix 12	12	B	71	80	Right-handed alpha
Helix 13	13	B	92	97	Right-handed 310
Helix 14	14	B	98	104	Right-handed alpha
Helix 15	15	B	116	130	Right-handed alpha
Helix 16	16	B	132	157	Right-handed alpha
Helix 17	17	C	11	13	Right-handed 310
Helix 18	18	C	14	28	Right-handed alpha
Helix 19	19	C	42	55	Right-handed alpha
Helix 20	20	C	71	80	Right-handed alpha
Helix 21	21	C	92	96	Right-handed 310
Helix 22	22	C	97	104	Right-handed alpha
Helix 23	23	C	116	129	Right-handed alpha
Helix 24	24	C	132	158	Right-handed alpha
Helix 25	25	D	11	13	Right-handed 310
Helix 26	26	D	14	28	Right-handed alpha
Helix 27	27	D	42	55	Right-handed alpha
Helix 28	28	D	71	80	Right-handed alpha
Helix 29	29	D	92	98	Right-handed 310
Helix 30	30	D	99	104	Right-handed alpha
Helix 31	31	D	116	130	Right-handed alpha
Helix 32	32	D	132	157	Right-handed alpha
Helix 33	33	E	11	13	Right-handed 310
Helix 34	34	E	14	28	Right-handed alpha
Helix 35	35	E	42	55	Right-handed alpha
Helix 36	36	E	71	80	Right-handed alpha
Helix 37	37	E	92	97	Right-handed 310
Helix 38	38	E	98	104	Right-handed alpha
Helix 39	39	E	116	130	Right-handed alpha
Helix 40	40	E	132	157	Right-handed alpha
Helix 41	41	F	11	13	Right-handed 310
Helix 42	42	F	14	28	Right-handed alpha
Helix 43	43	F	42	55	Right-handed alpha
Helix 44	44	F	71	80	Right-handed alpha
Helix 45	45	F	92	97	Right-handed 310
Helix 46	46	F	98	104	Right-handed alpha
Helix 47	47	F	116	130	Right-handed alpha
Helix 48	48	F	132	157	Right-handed alpha
Helix 49	49	G	11	13	Right-handed 310
Helix 50	50	G	14	28	Right-handed alpha
Helix 51	51	G	42	55	Right-handed alpha
Helix 52	52	G	71	80	Right-handed alpha
Helix 53	53	G	92	98	Right-handed 310
Helix 54	54	G	99	104	Right-handed alpha
Helix 55	55	G	116	129	Right-handed alpha
Helix 56	56	G	132	158	Right-handed alpha
Helix 57	57	H	11	13	Right-handed 310
Helix 58	58	H	14	28	Right-handed alpha
Helix 59	59	H	42	55	Right-handed alpha
Helix 60	60	H	71	80	Right-handed alpha
Helix 61	61	H	92	97	Right-handed 310
Helix 62	62	H	98	104	Right-handed alpha
Helix 63	63	H	116	129	Right-handed alpha
Helix 64	64	H	132	157	Right-handed alpha

There are 8 sheets in PDB entry 3RG8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	36	first strand
Strand 2	A	4	9	parallel
Strand 3	A	60	65	parallel
Strand 4	A	84	86	parallel
Strand 5	A	112	113	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	36	first strand
Strand 2	B	4	9	parallel
Strand 3	B	60	65	parallel
Strand 4	B	84	86	parallel
Strand 5	B	112	113	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	36	first strand
Strand 2	C	4	9	parallel
Strand 3	C	60	65	parallel
Strand 4	C	84	86	parallel
Strand 5	C	112	113	parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	36	first strand
Strand 2	D	4	9	parallel
Strand 3	D	60	65	parallel
Strand 4	D	84	86	parallel
Strand 5	D	112	113	parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	36	first strand
Strand 2	E	4	9	parallel
Strand 3	E	60	65	parallel
Strand 4	E	84	86	parallel
Strand 5	E	112	113	parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	36	first strand
Strand 2	F	4	9	parallel
Strand 3	F	60	65	parallel
Strand 4	F	84	86	parallel
Strand 5	F	112	113	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	36	first strand
Strand 2	G	4	9	parallel
Strand 3	G	60	65	parallel
Strand 4	G	84	86	parallel
Strand 5	G	112	113	parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	32	36	first strand
Strand 2	H	4	9	parallel
Strand 3	H	60	65	parallel
Strand 4	H	84	86	parallel
Strand 5	H	112	113	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3RG8

Analysis of interatomic Contacts of Structural Units in PDB entry:
3RG8