Analysis of interatomic Contacts of Structural Units in PDB entry:
3RGT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RGT entry

There are 4 chains in PDB entry 3RGT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3TRP 405
B
 LEU 3TRP 405
C
 LEU 3TRP 405
D
 LEU 3TRP 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 3RGT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 53Right-handed alpha
Helix 2
2
A
53 58Right-handed alpha
Helix 3
3
A
64 76Right-handed alpha
Helix 4
4
A
81 104Right-handed alpha
Helix 5
5
A
106 111Right-handed alpha
Helix 6
6
A
129 143Right-handed alpha
Helix 7
7
A
185 205Right-handed alpha
Helix 8
8
A
219 230Right-handed alpha
Helix 9
9
A
231 234Right-handed 310
Helix 10
10
A
246 249Right-handed 310
Helix 11
11
A
250 257Right-handed alpha
Helix 12
12
A
269 272Right-handed 310
Helix 13
13
A
273 279Right-handed alpha
Helix 14
14
A
293 308Right-handed alpha
Helix 15
15
A
321 335Right-handed alpha
Helix 16
16
A
347 354Right-handed alpha
Helix 17
17
A
378 383Right-handed alpha
Helix 18
18
B
41 53Right-handed alpha
Helix 19
19
B
53 58Right-handed alpha
Helix 20
20
B
64 76Right-handed alpha
Helix 21
21
B
81 104Right-handed alpha
Helix 22
22
B
106 111Right-handed alpha
Helix 23
23
B
129 143Right-handed alpha
Helix 24
24
B
185 205Right-handed alpha
Helix 25
25
B
219 230Right-handed alpha
Helix 26
26
B
231 234Right-handed 310
Helix 27
27
B
246 249Right-handed 310
Helix 28
28
B
250 257Right-handed alpha
Helix 29
29
B
269 272Right-handed 310
Helix 30
30
B
273 279Right-handed alpha
Helix 31
31
B
293 308Right-handed alpha
Helix 32
32
B
321 335Right-handed alpha
Helix 33
33
B
347 354Right-handed alpha
Helix 34
34
B
378 383Right-handed alpha
Helix 35
35
C
41 53Right-handed alpha
Helix 36
36
C
53 58Right-handed alpha
Helix 37
37
C
64 76Right-handed alpha
Helix 38
38
C
81 103Right-handed alpha
Helix 39
39
C
106 111Right-handed alpha
Helix 40
40
C
129 143Right-handed alpha
Helix 41
41
C
185 205Right-handed alpha
Helix 42
42
C
219 231Right-handed alpha
Helix 43
43
C
232 234Right-handed 310
Helix 44
44
C
246 249Right-handed 310
Helix 45
45
C
250 257Right-handed alpha
Helix 46
46
C
269 272Right-handed 310
Helix 47
47
C
273 279Right-handed alpha
Helix 48
48
C
293 308Right-handed alpha
Helix 49
49
C
321 335Right-handed alpha
Helix 50
50
C
347 354Right-handed alpha
Helix 51
51
C
378 383Right-handed alpha
Helix 52
52
D
41 52Right-handed alpha
Helix 53
53
D
53 58Right-handed alpha
Helix 54
54
D
64 76Right-handed alpha
Helix 55
55
D
81 103Right-handed alpha
Helix 56
56
D
106 112Right-handed alpha
Helix 57
57
D
129 143Right-handed alpha
Helix 58
58
D
185 205Right-handed alpha
Helix 59
59
D
219 231Right-handed alpha
Helix 60
60
D
232 234Right-handed 310
Helix 61
61
D
246 249Right-handed 310
Helix 62
62
D
250 257Right-handed alpha
Helix 63
63
D
269 272Right-handed 310
Helix 64
64
D
273 279Right-handed alpha
Helix 65
65
D
293 307Right-handed alpha
Helix 66
66
D
321 335Right-handed alpha
Helix 67
67
D
347 354Right-handed alpha
Helix 68
68
D
378 383Right-handed alpha
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There are 13 sheets in PDB entry 3RGT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 13first strand
Strand 2
A
19 26anti-parallel
Strand 3
A
31 35anti-parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 361first strand
Strand 2
A
364 366anti-parallel
Strand 3
A
119 127anti-parallel
Strand 4
A
338 342parallel
Strand 5
A
311 314parallel
Strand 6
A
284 285parallel
Strand 7
A
261 263parallel
Strand 8
A
237 239parallel
Strand 9
A
209 213parallel
Strand 10
A
147 152parallel
Strand 11
A
119 127parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 184first strand
Strand 2
A
394 397parallel
Strand 3
A
402 403anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 13first strand
Strand 2
B
19 26anti-parallel
Strand 3
B
31 35anti-parallel
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There are 11 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 361first strand
Strand 2
B
364 366anti-parallel
Strand 3
B
119 127anti-parallel
Strand 4
B
338 342parallel
Strand 5
B
311 314parallel
Strand 6
B
284 285parallel
Strand 7
B
261 263parallel
Strand 8
B
237 239parallel
Strand 9
B
209 213parallel
Strand 10
B
147 152parallel
Strand 11
B
119 127parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 184first strand
Strand 2
B
394 397parallel
Strand 3
B
402 403anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 13first strand
Strand 2
C
19 26anti-parallel
Strand 3
C
31 35anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
311 312first strand
Strand 2
C
284 285parallel
Strand 3
C
261 263parallel
Strand 4
C
237 239parallel
Strand 5
C
209 213parallel
Strand 6
C
147 152parallel
Strand 7
C
119 127parallel
Strand 8
C
341 342parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
311 312first strand
Strand 2
C
284 285parallel
Strand 3
C
261 263parallel
Strand 4
C
237 239parallel
Strand 5
C
209 213parallel
Strand 6
C
147 152parallel
Strand 7
C
119 127parallel
Strand 8
C
364 366anti-parallel
Strand 9
C
359 361anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
181 184first strand
Strand 2
C
394 397parallel
Strand 3
C
402 403anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 13first strand
Strand 2
D
19 26anti-parallel
Strand 3
D
31 35anti-parallel
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There are 11 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
359 361first strand
Strand 2
D
364 366anti-parallel
Strand 3
D
119 127anti-parallel
Strand 4
D
338 342parallel
Strand 5
D
311 314parallel
Strand 6
D
284 285parallel
Strand 7
D
261 263parallel
Strand 8
D
237 239parallel
Strand 9
D
209 213parallel
Strand 10
D
147 152parallel
Strand 11
D
119 127parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
181 184first strand
Strand 2
D
394 397parallel
Strand 3
D
402 403anti-parallel
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