Analysis of interatomic Contacts of Structural Units in PDB entry:
3RGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RGV entry

There are 5 chains in PDB entry 3RGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1PRO 200
B
 ALA 1TRP 236
C
 GLY 1GLU 275
D
 GLY 0MET 99
E
 TRP 1SER 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3RGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
162 165Right-handed 310
Helix 2
2
B
80 84Right-handed 310
Helix 3
3
B
127 135Right-handed alpha
Helix 4
4
B
194 199Right-handed alpha
Helix 5
5
C
49 53Right-handed 310
Helix 6
6
C
56 85Right-handed alpha
Helix 7
7
C
137 150Right-handed alpha
Helix 8
8
C
151 162Right-handed alpha
Helix 9
9
C
162 180Right-handed alpha
Helix 10
10
C
225 228Right-handed 310
Helix 11
11
C
252 257Right-handed 310
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There are 16 sheets in PDB entry 3RGV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
23 25anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
103 108parallel
Strand 3
A
85 92anti-parallel
Strand 4
A
31 37anti-parallel
Strand 5
A
44 49anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
74 76anti-parallel
Strand 3
A
61 64anti-parallel
Strand 4
A
55 58anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
A
166 174anti-parallel
Strand 3
A
130 135anti-parallel
Strand 4
A
117 123anti-parallel
Strand 5
B
120 125anti-parallel
Strand 6
B
136 146anti-parallel
Strand 7
B
184 193anti-parallel
Strand 8
B
166 168anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 161first strand
Strand 2
A
166 174anti-parallel
Strand 3
A
130 135anti-parallel
Strand 4
A
117 123anti-parallel
Strand 5
B
120 125anti-parallel
Strand 6
B
136 146anti-parallel
Strand 7
B
184 193anti-parallel
Strand 8
B
173 174anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
71 76anti-parallel
Strand 4
B
62 65anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
105 110parallel
Strand 3
B
85 92anti-parallel
Strand 4
B
29 36anti-parallel
Strand 5
B
40 47anti-parallel
Strand 6
B
54 55anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
105 110parallel
Strand 3
B
85 92anti-parallel
Strand 4
B
100 101anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
151 157anti-parallel
Strand 3
B
204 210anti-parallel
Strand 4
B
229 235anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 47first strand
Strand 2
C
31 37anti-parallel
Strand 3
C
21 28anti-parallel
Strand 4
C
3 12anti-parallel
Strand 5
C
94 103anti-parallel
Strand 6
C
109 118anti-parallel
Strand 7
C
121 126anti-parallel
Strand 8
C
133 135anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
186 194first strand
Strand 2
C
198 208anti-parallel
Strand 3
C
241 250anti-parallel
Strand 4
C
229 230anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
186 194first strand
Strand 2
C
198 208anti-parallel
Strand 3
C
241 250anti-parallel
Strand 4
C
234 235anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
222 223first strand
Strand 2
C
214 219anti-parallel
Strand 3
C
258 262anti-parallel
Strand 4
C
270 272anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 11first strand
Strand 2
D
21 30anti-parallel
Strand 3
D
62 70anti-parallel
Strand 4
D
50 51anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 11first strand
Strand 2
D
21 30anti-parallel
Strand 3
D
62 70anti-parallel
Strand 4
D
55 56anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 45first strand
Strand 2
D
36 41anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
91 94anti-parallel
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