Analysis of interatomic Contacts of Structural Units in PDB entry:
3RIB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RIB entry

There are 2 chains in PDB entry 3RIB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 7HIS 436
B
GLY 7HIS 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3RIB. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
45 48Right-handed 310
Helix 2
2
A
75 96Right-handed alpha
Helix 3
3
A
97 100Right-handed 310
Helix 4
4
A
103 119Right-handed alpha
Helix 5
5
A
130 134Right-handed 310
Helix 6
6
A
137 141Right-handed 310
Helix 7
7
A
142 161Right-handed alpha
Helix 8
8
A
168 183Right-handed alpha
Helix 9
9
A
201 205Right-handed 310
Helix 10
10
A
246 258Right-handed alpha
Helix 11
11
A
264 270Right-handed alpha
Helix 12
12
A
272 277Right-handed alpha
Helix 13
13
A
287 309Right-handed alpha
Helix 14
14
A
313 330Right-handed alpha
Helix 15
15
A
336 353Right-handed alpha
Helix 16
16
A
355 374Right-handed alpha
Helix 17
17
A
378 395Right-handed alpha
Helix 18
18
A
397 417Right-handed alpha
Helix 19
19
A
420 432Right-handed alpha
Helix 20
20
B
75 96Right-handed alpha
Helix 21
21
B
97 100Right-handed 310
Helix 22
22
B
103 119Right-handed alpha
Helix 23
23
B
130 134Right-handed 310
Helix 24
24
B
137 141Right-handed 310
Helix 25
25
B
142 161Right-handed alpha
Helix 26
26
B
168 183Right-handed alpha
Helix 27
27
B
201 205Right-handed 310
Helix 28
28
B
246 258Right-handed alpha
Helix 29
29
B
265 270Right-handed alpha
Helix 30
30
B
272 277Right-handed alpha
Helix 31
31
B
289 309Right-handed alpha
Helix 32
32
B
313 330Right-handed alpha
Helix 33
33
B
337 354Right-handed alpha
Helix 34
34
B
355 374Right-handed alpha
Helix 35
35
B
378 395Right-handed alpha
Helix 36
36
B
397 416Right-handed alpha
Helix 37
37
B
420 432Right-handed alpha
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There are 10 sheets in PDB entry 3RIB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
9 14first strand
Strand 2
A
18 23anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
32 37first strand
Strand 2
A
221 226anti-parallel
Strand 3
A
213 218anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
40 43first strand
Strand 2
A
193 198anti-parallel
Strand 3
A
184 187anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
63 64first strand
Strand 2
A
72 73anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
206 207first strand
Strand 2
A
237 238parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
9 13first strand
Strand 2
B
19 23anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
32 37first strand
Strand 2
B
221 226anti-parallel
Strand 3
B
213 218anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
40 43first strand
Strand 2
B
193 198anti-parallel
Strand 3
B
184 187anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
63 64first strand
Strand 2
B
72 73anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
206 207first strand
Strand 2
B
237 238parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il