Analysis of interatomic Contacts of Structural Units in PDB entry:
3RII


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RII entry

There are 2 chains in PDB entry 3RII (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6ARG 227
B
 GLU 7ARG 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 3RII. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 25Right-handed alpha
Helix 2
2
A
71 76Right-handed 310
Helix 3
3
A
84 86Right-handed 310
Helix 4
4
A
87 99Right-handed alpha
Helix 5
5
A
108 119Right-handed alpha
Helix 6
6
A
122 132Right-handed alpha
Helix 7
7
A
133 143Right-handed alpha
Helix 8
8
A
158 163Right-handed 310
Helix 9
9
A
196 214Right-handed alpha
Helix 10
10
B
14 25Right-handed alpha
Helix 11
11
B
71 76Right-handed 310
Helix 12
12
B
84 86Right-handed 310
Helix 13
13
B
87 100Right-handed alpha
Helix 14
14
B
108 119Right-handed alpha
Helix 15
15
B
122 132Right-handed alpha
Helix 16
16
B
133 144Right-handed alpha
Helix 17
17
B
158 163Right-handed 310
Helix 18
18
B
196 213Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3RII. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
218 225anti-parallel
Strand 3
A
49 56anti-parallel
Strand 4
A
164 171anti-parallel
Strand 5
A
174 178anti-parallel
Strand 6
A
186 190anti-parallel
Strand 7
A
67 68anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 34first strand
Strand 2
B
218 225anti-parallel
Strand 3
B
49 56anti-parallel
Strand 4
B
164 171anti-parallel
Strand 5
B
174 178anti-parallel
Strand 6
B
186 190anti-parallel
Strand 7
B
67 68anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il