Analysis of interatomic Contacts of Structural Units in PDB entry:
3RIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RIP entry

There is 1 chain in PDB entry 3RIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 654
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3RIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 10Right-handed alpha
Helix 2
2
A
35 62Right-handed alpha
Helix 3
3
A
83 97Right-handed alpha
Helix 4
4
A
97 114Right-handed alpha
Helix 5
5
A
118 126Right-handed alpha
Helix 6
6
A
126 147Right-handed alpha
Helix 7
7
A
150 163Right-handed alpha
Helix 8
8
A
165 194Right-handed alpha
Helix 9
9
A
261 264Right-handed 310
Helix 10
10
A
269 285Right-handed alpha
Helix 11
11
A
302 316Right-handed alpha
Helix 12
12
A
321 348Right-handed alpha
Helix 13
13
A
349 361Right-handed alpha
Helix 14
14
A
365 381Right-handed alpha
Helix 15
15
A
387 403Right-handed alpha
Helix 16
16
A
410 412Right-handed 310
Helix 17
17
A
461 465Right-handed 310
Helix 18
18
A
467 499Right-handed alpha
Helix 19
19
A
500 504Right-handed 310
Helix 20
20
A
507 535Right-handed alpha
Helix 21
21
A
535 549Right-handed alpha
Helix 22
22
A
552 574Right-handed alpha
Helix 23
23
A
574 597Right-handed alpha
Helix 24
24
A
604 635Right-handed alpha
Helix 25
25
A
638 654Right-handed alpha
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There are 3 sheets in PDB entry 3RIP. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
24 26anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
257 259anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 418first strand
Strand 2
A
452 456anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il