Analysis of interatomic Contacts of Structural Units in PDB entry:
3RJ1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3RJ1 entry

There are 12 chains in PDB entry 3RJ1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 21	LYS 129
B	GLN 197	LYS 686
C	PRO 29	LYS 210
D	GLN 4	THR 120
E	VAL 2	VAL 300
F	GLY 2	LEU 210
G	PRO 14	ASP 190
H	TYR 21	LYS 129
I	GLN 197	LYS 686
J	PRO 29	LYS 210
K	GLN 4	THR 120
L	VAL 2	PHE 223

There are146 helices in PDB entry 3RJ1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	21	26	Right-handed alpha
Helix 2	2	A	36	41	Right-handed alpha
Helix 3	3	A	44	53	Right-handed alpha
Helix 4	4	A	60	73	Right-handed alpha
Helix 5	5	A	74	76	Right-handed 310
Helix 6	6	A	112	116	Right-handed 310
Helix 7	7	A	118	129	Right-handed alpha
Helix 8	8	B	199	208	Right-handed alpha
Helix 9	9	B	215	229	Right-handed alpha
Helix 10	10	B	271	276	Right-handed alpha
Helix 11	11	B	286	300	Right-handed alpha
Helix 12	12	B	301	312	Right-handed alpha
Helix 13	13	B	424	429	Right-handed alpha
Helix 14	14	B	434	454	Right-handed alpha
Helix 15	15	B	484	488	Right-handed 310
Helix 16	16	B	502	525	Right-handed alpha
Helix 17	17	B	555	564	Right-handed alpha
Helix 18	18	B	565	570	Right-handed alpha
Helix 19	19	B	571	575	Right-handed 310
Helix 20	20	B	600	612	Right-handed alpha
Helix 21	21	B	674	684	Right-handed alpha
Helix 22	22	C	37	55	Right-handed alpha
Helix 23	23	C	62	83	Right-handed alpha
Helix 24	24	C	106	110	Right-handed 310
Helix 25	25	C	111	117	Right-handed alpha
Helix 26	26	C	120	124	Right-handed 310
Helix 27	27	C	146	159	Right-handed alpha
Helix 28	28	C	163	168	Right-handed alpha
Helix 29	29	C	198	204	Right-handed alpha
Helix 30	30	D	5	12	Right-handed alpha
Helix 31	31	D	14	22	Right-handed alpha
Helix 32	32	D	48	78	Right-handed alpha
Helix 33	33	D	104	109	Right-handed alpha
Helix 34	34	E	15	26	Right-handed alpha
Helix 35	35	E	71	76	Right-handed alpha
Helix 36	36	E	78	83	Right-handed alpha
Helix 37	37	E	201	206	Right-handed alpha
Helix 38	38	E	272	283	Right-handed alpha
Helix 39	39	F	20	25	Right-handed alpha
Helix 40	40	F	89	94	Right-handed alpha
Helix 41	41	F	103	112	Right-handed alpha
Helix 42	42	F	162	167	Right-handed alpha
Helix 43	43	F	201	206	Right-handed alpha
Helix 44	44	G	16	23	Right-handed alpha
Helix 45	45	G	33	38	Right-handed alpha
Helix 46	46	G	51	56	Right-handed alpha
Helix 47	47	G	100	106	Right-handed alpha
Helix 48	48	G	175	187	Right-handed alpha
Helix 49	49	H	21	26	Right-handed alpha
Helix 50	50	H	36	41	Right-handed alpha
Helix 51	51	H	44	53	Right-handed alpha
Helix 52	52	H	60	73	Right-handed alpha
Helix 53	53	H	74	76	Right-handed 310
Helix 54	54	H	112	116	Right-handed 310
Helix 55	55	H	118	129	Right-handed alpha
Helix 56	56	I	199	208	Right-handed alpha
Helix 57	57	I	215	229	Right-handed alpha
Helix 58	58	I	271	276	Right-handed alpha
Helix 59	59	I	286	300	Right-handed alpha
Helix 60	60	I	301	312	Right-handed alpha
Helix 61	61	I	424	429	Right-handed alpha
Helix 62	62	I	434	454	Right-handed alpha
Helix 63	63	I	484	488	Right-handed 310
Helix 64	64	I	502	525	Right-handed alpha
Helix 65	65	I	555	564	Right-handed alpha
Helix 66	66	I	565	570	Right-handed alpha
Helix 67	67	I	571	575	Right-handed 310
Helix 68	68	I	600	612	Right-handed alpha
Helix 69	69	I	674	684	Right-handed alpha
Helix 70	70	J	37	55	Right-handed alpha
Helix 71	71	J	62	83	Right-handed alpha
Helix 72	72	J	106	110	Right-handed 310
Helix 73	73	J	111	117	Right-handed alpha
Helix 74	74	J	120	124	Right-handed 310
Helix 75	75	J	146	159	Right-handed alpha
Helix 76	76	J	163	168	Right-handed alpha
Helix 77	77	J	198	204	Right-handed alpha
Helix 78	78	K	5	12	Right-handed alpha
Helix 79	79	K	14	22	Right-handed alpha
Helix 80	80	K	48	78	Right-handed alpha
Helix 81	81	K	104	109	Right-handed alpha
Helix 82	82	L	15	26	Right-handed alpha
Helix 83	83	L	71	76	Right-handed alpha
Helix 84	84	L	78	83	Right-handed alpha
Helix 85	85	L	201	206	Right-handed alpha
Helix 86	86	L	272	283	Right-handed alpha
Helix 87	87	M	20	25	Right-handed alpha
Helix 88	88	M	89	94	Right-handed alpha
Helix 89	89	M	103	112	Right-handed alpha
Helix 90	90	M	162	167	Right-handed alpha
Helix 91	91	M	201	206	Right-handed alpha
Helix 92	92	N	16	23	Right-handed alpha
Helix 93	93	N	33	38	Right-handed alpha
Helix 94	94	N	51	56	Right-handed alpha
Helix 95	95	N	100	106	Right-handed alpha
Helix 96	96	N	175	187	Right-handed alpha
Helix 97	97	O	21	26	Right-handed alpha
Helix 98	98	O	36	41	Right-handed alpha
Helix 99	99	O	44	53	Right-handed alpha
Helix 100	100	O	60	73	Right-handed alpha
Helix 101	101	O	74	76	Right-handed 310
Helix 102	102	O	112	116	Right-handed 310
Helix 103	103	O	118	129	Right-handed alpha
Helix 104	104	P	199	208	Right-handed alpha
Helix 105	105	P	215	229	Right-handed alpha
Helix 106	106	P	271	276	Right-handed alpha
Helix 107	107	P	286	300	Right-handed alpha
Helix 108	108	P	301	312	Right-handed alpha
Helix 109	109	P	424	429	Right-handed alpha
Helix 110	110	P	434	454	Right-handed alpha
Helix 111	111	P	484	488	Right-handed 310
Helix 112	112	P	498	525	Right-handed alpha
Helix 113	113	P	555	564	Right-handed alpha
Helix 114	114	P	565	570	Right-handed alpha
Helix 115	115	P	571	575	Right-handed 310
Helix 116	116	P	600	612	Right-handed alpha
Helix 117	117	P	674	684	Right-handed alpha
Helix 118	118	Q	37	55	Right-handed alpha
Helix 119	119	Q	62	83	Right-handed alpha
Helix 120	120	Q	106	110	Right-handed 310
Helix 121	121	Q	111	117	Right-handed alpha
Helix 122	122	Q	120	124	Right-handed 310
Helix 123	123	Q	146	159	Right-handed alpha
Helix 124	124	Q	163	168	Right-handed alpha
Helix 125	125	Q	198	204	Right-handed alpha
Helix 126	126	R	5	12	Right-handed alpha
Helix 127	127	R	14	22	Right-handed alpha
Helix 128	128	R	48	78	Right-handed alpha
Helix 129	129	R	104	109	Right-handed alpha
Helix 130	130	S	15	26	Right-handed alpha
Helix 131	131	S	71	76	Right-handed alpha
Helix 132	132	S	78	83	Right-handed alpha
Helix 133	133	S	201	206	Right-handed alpha
Helix 134	134	S	272	283	Right-handed alpha
Helix 135	135	T	13	17	Right-handed 310
Helix 136	136	T	18	19	Right-handed 310
Helix 137	137	T	20	25	Right-handed alpha
Helix 138	138	T	89	94	Right-handed alpha
Helix 139	139	T	103	112	Right-handed alpha
Helix 140	140	T	162	167	Right-handed alpha
Helix 141	141	T	201	206	Right-handed alpha
Helix 142	142	U	16	23	Right-handed alpha
Helix 143	143	U	33	38	Right-handed alpha
Helix 144	144	U	51	56	Right-handed alpha
Helix 145	145	U	100	106	Right-handed alpha
Helix 146	146	U	175	187	Right-handed alpha

There are 24 sheets in PDB entry 3RJ1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1621	1622	first strand
Strand 2	B	1721	1722	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	166	170	first strand
Strand 2	E	182	188	anti-parallel
Strand 3	E	3	7	anti-parallel
Strand 4	E	255	258	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	11	first strand
Strand 2	E	251	252	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	41	first strand
Strand 2	E	64	66	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	193	195	first strand
Strand 2	F	76	79	anti-parallel
Strand 3	F	69	73	anti-parallel
Strand 4	F	57	62	anti-parallel
Strand 5	F	37	43	anti-parallel
Strand 6	F	117	122	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	216	217	first strand
Strand 2	E	235	237	anti-parallel
Strand 3	E	244	245	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	224	first strand
Strand 2	E	228	232	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	9	first strand
Strand 2	F	151	157	anti-parallel
Strand 3	F	135	140	anti-parallel
Strand 4	F	128	130	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1621	1622	first strand
Strand 2	I	1721	1722	parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	166	170	first strand
Strand 2	L	182	188	anti-parallel
Strand 3	L	3	7	anti-parallel
Strand 4	L	255	258	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	11	first strand
Strand 2	L	251	252	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	39	41	first strand
Strand 2	L	64	66	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	193	195	first strand
Strand 2	M	76	79	anti-parallel
Strand 3	M	69	73	anti-parallel
Strand 4	M	57	62	anti-parallel
Strand 5	M	37	43	anti-parallel
Strand 6	M	117	122	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	216	217	first strand
Strand 2	L	235	237	anti-parallel
Strand 3	L	244	245	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	220	224	first strand
Strand 2	L	228	232	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	5	9	first strand
Strand 2	M	151	157	anti-parallel
Strand 3	M	135	140	anti-parallel
Strand 4	M	128	130	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1621	1622	first strand
Strand 2	P	1721	1722	parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	166	170	first strand
Strand 2	S	182	188	anti-parallel
Strand 3	S	3	7	anti-parallel
Strand 4	S	255	258	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	11	first strand
Strand 2	S	251	252	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	39	41	first strand
Strand 2	S	64	66	anti-parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	193	195	first strand
Strand 2	T	76	79	anti-parallel
Strand 3	T	69	73	anti-parallel
Strand 4	T	57	62	anti-parallel
Strand 5	T	37	43	anti-parallel
Strand 6	T	117	122	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	216	217	first strand
Strand 2	S	235	237	anti-parallel
Strand 3	S	244	245	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	220	224	first strand
Strand 2	S	228	232	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	5	9	first strand
Strand 2	T	151	157	anti-parallel
Strand 3	T	135	140	anti-parallel
Strand 4	T	128	130	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3RJ1

Analysis of interatomic Contacts of Structural Units in PDB entry:
3RJ1