Analysis of interatomic Contacts of Structural Units in PDB entry:
3RJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RJ3 entry

There are 6 chains in PDB entry 3RJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3PRO 294
B
 LEU 10SER 309
C
 ASP 3PRO 294
D
 GLY 1107ARG 1231
E
 GLY 1107ARG 1231
F
 GLY 1107CYS 1228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 3RJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 11Right-handed 310
Helix 2
2
A
19 38Right-handed alpha
Helix 3
3
A
40 45Right-handed alpha
Helix 4
4
A
47 64Right-handed alpha
Helix 5
5
A
65 67Right-handed 310
Helix 6
6
A
82 97Right-handed alpha
Helix 7
7
A
103 118Right-handed alpha
Helix 8
8
A
133 141Right-handed 310
Helix 9
9
A
145 161Right-handed alpha
Helix 10
10
A
161 166Right-handed alpha
Helix 11
11
A
171 187Right-handed alpha
Helix 12
12
A
188 190Right-handed 310
Helix 13
13
A
192 206Right-handed alpha
Helix 14
14
A
210 220Right-handed alpha
Helix 15
15
A
232 251Right-handed alpha
Helix 16
16
A
255 266Right-handed alpha
Helix 17
17
A
275 293Right-handed alpha
Helix 18
18
B
16 38Right-handed alpha
Helix 19
19
B
45 47Right-handed 310
Helix 20
20
B
48 64Right-handed alpha
Helix 21
21
B
65 67Right-handed 310
Helix 22
22
B
82 95Right-handed alpha
Helix 23
23
B
103 118Right-handed alpha
Helix 24
24
B
133 142Right-handed 310
Helix 25
25
B
145 166Right-handed alpha
Helix 26
26
B
171 187Right-handed alpha
Helix 27
27
B
188 190Right-handed 310
Helix 28
28
B
192 206Right-handed alpha
Helix 29
29
B
211 220Right-handed alpha
Helix 30
30
B
221 225Right-handed 310
Helix 31
31
B
232 251Right-handed alpha
Helix 32
32
B
255 266Right-handed alpha
Helix 33
33
B
275 293Right-handed alpha
Helix 34
34
B
303 307Right-handed 310
Helix 35
35
C
3 11Right-handed 310
Helix 36
36
C
19 35Right-handed alpha
Helix 37
37
C
40 45Right-handed alpha
Helix 38
38
C
45 64Right-handed alpha
Helix 39
39
C
65 67Right-handed 310
Helix 40
40
C
82 97Right-handed alpha
Helix 41
41
C
103 118Right-handed alpha
Helix 42
42
C
133 141Right-handed 310
Helix 43
43
C
145 166Right-handed alpha
Helix 44
44
C
167 169Right-handed 310
Helix 45
45
C
171 187Right-handed alpha
Helix 46
46
C
188 190Right-handed 310
Helix 47
47
C
192 206Right-handed alpha
Helix 48
48
C
210 220Right-handed alpha
Helix 49
49
C
232 251Right-handed alpha
Helix 50
50
C
255 266Right-handed alpha
Helix 51
51
C
275 293Right-handed alpha
Helix 52
52
D
1170 1177Right-handed alpha
Helix 53
53
E
1170 1178Right-handed alpha
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There are 14 sheets in PDB entry 3RJ3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1118 1120first strand
Strand 2
D
1133 1138anti-parallel
Strand 3
D
1149 1153anti-parallel
Strand 4
D
1156 1157anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1143 1145first strand
Strand 2
D
1162 1164anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1167 1168first strand
Strand 2
D
1190 1191anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1179 1181first strand
Strand 2
D
1196 1201anti-parallel
Strand 3
D
1215 1217anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1205 1207first strand
Strand 2
D
1228 1230anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1118 1120first strand
Strand 2
E
1133 1138anti-parallel
Strand 3
E
1149 1151anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1143 1145first strand
Strand 2
E
1162 1164anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1167 1168first strand
Strand 2
E
1190 1191anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1179 1181first strand
Strand 2
E
1196 1201anti-parallel
Strand 3
E
1215 1217anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1205 1207first strand
Strand 2
E
1228 1230anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
1118 1120first strand
Strand 2
F
1133 1138anti-parallel
Strand 3
F
1149 1153anti-parallel
Strand 4
F
1156 1157anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
1143 1145first strand
Strand 2
F
1162 1164anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
1167 1169first strand
Strand 2
F
1189 1191anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
1180 1181first strand
Strand 2
F
1196 1200anti-parallel
Strand 3
F
1215 1217anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il