Analysis of interatomic Contacts of Structural Units in PDB entry:
3RJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RJ4 entry

There are 2 chains in PDB entry 3RJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 29GLN 287
B
 ASN 29GLN 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 3RJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 36Right-handed 310
Helix 2
2
A
41 46Right-handed alpha
Helix 3
3
A
47 49Right-handed 310
Helix 4
4
A
94 104Right-handed alpha
Helix 5
5
A
112 129Right-handed alpha
Helix 6
6
A
138 143Right-handed 310
Helix 7
7
A
168 173Right-handed 310
Helix 8
8
A
193 198Right-handed alpha
Helix 9
9
A
215 225Right-handed alpha
Helix 10
10
A
226 229Right-handed 310
Helix 11
11
A
232 249Right-handed alpha
Helix 12
12
B
32 36Right-handed 310
Helix 13
13
B
41 48Right-handed alpha
Helix 14
14
B
94 104Right-handed alpha
Helix 15
15
B
112 129Right-handed alpha
Helix 16
16
B
138 143Right-handed 310
Helix 17
17
B
168 173Right-handed 310
Helix 18
18
B
215 225Right-handed alpha
Helix 19
19
B
232 249Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3RJ4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
91 93anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
80 86anti-parallel
Strand 3
A
57 64anti-parallel
Strand 4
A
265 272anti-parallel
Strand 5
A
252 259anti-parallel
Strand 6
A
202 214anti-parallel
Strand 7
A
176 191anti-parallel
Strand 8
A
153 154parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
76 78anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 40first strand
Strand 2
B
91 93anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 137first strand
Strand 2
B
80 86anti-parallel
Strand 3
B
57 64anti-parallel
Strand 4
B
265 272anti-parallel
Strand 5
B
252 259anti-parallel
Strand 6
B
201 214anti-parallel
Strand 7
B
176 192anti-parallel
Strand 8
B
153 154parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 70first strand
Strand 2
B
76 78anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il