Analysis of interatomic Contacts of Structural Units in PDB entry:
3RJ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RJ8 entry

There is 1 chain in PDB entry 3RJ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1LYS 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3RJ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 10Right-handed alpha
Helix 2
2
A
19 26Right-handed alpha
Helix 3
3
A
45 59Right-handed alpha
Helix 4
4
A
74 78Right-handed 310
Helix 5
5
A
111 124Right-handed alpha
Helix 6
6
A
136 144Right-handed alpha
Helix 7
7
A
149 154Right-handed alpha
Helix 8
8
A
155 158Right-handed 310
Helix 9
9
A
180 191Right-handed alpha
Helix 10
10
A
192 194Right-handed 310
Helix 11
11
A
222 240Right-handed alpha
Helix 12
12
A
266 279Right-handed alpha
Helix 13
13
A
294 302Right-handed alpha
Helix 14
14
A
331 344Right-handed alpha
Helix 15
15
A
345 348Right-handed 310
Helix 16
16
A
365 370Right-handed 310
Helix 17
17
A
399 402Right-handed 310
Helix 18
18
A
403 415Right-handed alpha
Helix 19
19
A
416 417Right-handed 310
Helix 20
20
A
418 420Right-handed 310
Helix 21
21
A
425 429Right-handed 310
Helix 22
22
A
434 444Right-handed alpha
Helix 23
23
A
446 458Right-handed alpha
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There are 5 sheets in PDB entry 3RJ8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
84 87parallel
Strand 3
A
63 66parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
103 106anti-parallel
Strand 3
A
196 203anti-parallel
Strand 4
A
160 166anti-parallel
Strand 5
A
172 175anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
205 206anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 287first strand
Strand 2
A
211 217anti-parallel
Strand 3
A
291 293anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 287first strand
Strand 2
A
211 217anti-parallel
Strand 3
A
258 263anti-parallel
Strand 4
A
245 251anti-parallel
Strand 5
A
352 359anti-parallel
Strand 6
A
384 392anti-parallel
Strand 7
A
318 326anti-parallel
Strand 8
A
422 423anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il