Analysis of interatomic Contacts of Structural Units in PDB entry:
3RJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RJ9 entry

There are 6 chains in PDB entry 3RJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 254
B
 MET 1ILE 254
C
 MET 1ILE 254
D
 MET 1ILE 254
E
 MET 1ILE 254
F
 MET 1ILE 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 3RJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 27Right-handed alpha
Helix 2
2
A
41 52Right-handed alpha
Helix 3
3
A
67 83Right-handed alpha
Helix 4
4
A
99 108Right-handed alpha
Helix 5
5
A
108 123Right-handed alpha
Helix 6
6
A
124 127Right-handed 310
Helix 7
7
A
138 142Right-handed 310
Helix 8
8
A
148 168Right-handed alpha
Helix 9
9
A
168 173Right-handed alpha
Helix 10
10
A
194 198Right-handed 310
Helix 11
11
A
201 207Right-handed alpha
Helix 12
12
A
214 228Right-handed alpha
Helix 13
13
B
15 26Right-handed alpha
Helix 14
14
B
41 52Right-handed alpha
Helix 15
15
B
67 83Right-handed alpha
Helix 16
16
B
99 108Right-handed alpha
Helix 17
17
B
108 123Right-handed alpha
Helix 18
18
B
124 127Right-handed 310
Helix 19
19
B
138 142Right-handed 310
Helix 20
20
B
148 168Right-handed alpha
Helix 21
21
B
168 173Right-handed alpha
Helix 22
22
B
194 198Right-handed 310
Helix 23
23
B
201 207Right-handed alpha
Helix 24
24
B
214 228Right-handed alpha
Helix 25
25
C
15 26Right-handed alpha
Helix 26
26
C
41 52Right-handed alpha
Helix 27
27
C
67 83Right-handed alpha
Helix 28
28
C
99 108Right-handed alpha
Helix 29
29
C
108 123Right-handed alpha
Helix 30
30
C
124 127Right-handed 310
Helix 31
31
C
138 142Right-handed 310
Helix 32
32
C
148 168Right-handed alpha
Helix 33
33
C
168 173Right-handed alpha
Helix 34
34
C
186 191Right-handed alpha
Helix 35
35
C
194 198Right-handed 310
Helix 36
36
C
201 208Right-handed alpha
Helix 37
37
C
213 228Right-handed alpha
Helix 38
38
D
15 27Right-handed alpha
Helix 39
39
D
41 52Right-handed alpha
Helix 40
40
D
67 83Right-handed alpha
Helix 41
41
D
99 108Right-handed alpha
Helix 42
42
D
108 123Right-handed alpha
Helix 43
43
D
124 127Right-handed 310
Helix 44
44
D
138 142Right-handed 310
Helix 45
45
D
148 168Right-handed alpha
Helix 46
46
D
168 173Right-handed alpha
Helix 47
47
D
186 191Right-handed alpha
Helix 48
48
D
194 198Right-handed 310
Helix 49
49
D
201 207Right-handed alpha
Helix 50
50
D
214 228Right-handed alpha
Helix 51
51
E
15 26Right-handed alpha
Helix 52
52
E
41 52Right-handed alpha
Helix 53
53
E
67 83Right-handed alpha
Helix 54
54
E
99 108Right-handed alpha
Helix 55
55
E
108 123Right-handed alpha
Helix 56
56
E
138 142Right-handed 310
Helix 57
57
E
148 168Right-handed alpha
Helix 58
58
E
168 173Right-handed alpha
Helix 59
59
E
186 191Right-handed alpha
Helix 60
60
E
194 198Right-handed 310
Helix 61
61
E
201 208Right-handed alpha
Helix 62
62
E
214 228Right-handed alpha
Helix 63
63
F
15 26Right-handed alpha
Helix 64
64
F
41 52Right-handed alpha
Helix 65
65
F
67 83Right-handed alpha
Helix 66
66
F
99 108Right-handed alpha
Helix 67
67
F
108 123Right-handed alpha
Helix 68
68
F
124 127Right-handed 310
Helix 69
69
F
138 142Right-handed 310
Helix 70
70
F
148 168Right-handed alpha
Helix 71
71
F
168 173Right-handed alpha
Helix 72
72
F
186 191Right-handed alpha
Helix 73
73
F
194 198Right-handed 310
Helix 74
74
F
201 208Right-handed alpha
Helix 75
75
F
213 228Right-handed alpha
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There are 10 sheets in PDB entry 3RJ9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 61first strand
Strand 2
A
32 37parallel
Strand 3
A
7 11parallel
Strand 4
A
87 90parallel
Strand 5
A
131 136parallel
Strand 6
A
174 181parallel
Strand 7
A
233 236parallel
Strand 8
A
242 243anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
212 213parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 61first strand
Strand 2
B
32 37parallel
Strand 3
B
7 11parallel
Strand 4
B
87 90parallel
Strand 5
B
131 136parallel
Strand 6
B
174 181parallel
Strand 7
B
233 237parallel
Strand 8
B
240 243anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 185first strand
Strand 2
B
212 213parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 61first strand
Strand 2
C
32 37parallel
Strand 3
C
7 11parallel
Strand 4
C
87 90parallel
Strand 5
C
131 136parallel
Strand 6
C
174 181parallel
Strand 7
C
233 236parallel
Strand 8
C
242 243anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 61first strand
Strand 2
D
32 37parallel
Strand 3
D
7 11parallel
Strand 4
D
87 90parallel
Strand 5
D
131 136parallel
Strand 6
D
174 181parallel
Strand 7
D
233 237parallel
Strand 8
D
240 243anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
184 185first strand
Strand 2
D
212 213parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
56 61first strand
Strand 2
E
32 37parallel
Strand 3
E
7 11parallel
Strand 4
E
87 90parallel
Strand 5
E
131 136parallel
Strand 6
E
174 181parallel
Strand 7
E
233 236parallel
Strand 8
E
242 243anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
184 185first strand
Strand 2
E
212 213parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
56 61first strand
Strand 2
F
32 37parallel
Strand 3
F
7 11parallel
Strand 4
F
87 90parallel
Strand 5
F
131 136parallel
Strand 6
F
174 181parallel
Strand 7
F
233 237parallel
Strand 8
F
240 243anti-parallel
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