Analysis of interatomic Contacts of Structural Units in PDB entry:
3RJT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RJT entry

There are 4 chains in PDB entry 3RJT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0ASP 17
A
 GLY 19LEU 213
B
 ALA 0ASP 17
B
 GLY 19LEU 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3RJT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 18Right-handed alpha
Helix 2
2
A
35 48Right-handed alpha
Helix 3
3
A
49 52Right-handed 310
Helix 4
4
A
64 76Right-handed alpha
Helix 5
5
A
77 80Right-handed 310
Helix 6
6
A
89 99Right-handed alpha
Helix 7
7
A
102 106Right-handed 310
Helix 8
8
A
108 124Right-handed alpha
Helix 9
9
A
125 127Right-handed 310
Helix 10
10
A
144 165Right-handed alpha
Helix 11
11
A
170 180Right-handed alpha
Helix 12
12
A
183 188Right-handed alpha
Helix 13
13
A
195 210Right-handed alpha
Helix 14
14
B
13 18Right-handed alpha
Helix 15
15
B
35 48Right-handed alpha
Helix 16
16
B
49 52Right-handed 310
Helix 17
17
B
64 76Right-handed alpha
Helix 18
18
B
77 80Right-handed 310
Helix 19
19
B
89 99Right-handed alpha
Helix 20
20
B
102 106Right-handed 310
Helix 21
21
B
108 124Right-handed alpha
Helix 22
22
B
125 127Right-handed 310
Helix 23
23
B
144 165Right-handed alpha
Helix 24
24
B
170 180Right-handed alpha
Helix 25
25
B
183 188Right-handed alpha
Helix 26
26
B
195 210Right-handed alpha
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There are 2 sheets in PDB entry 3RJT. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
54 57anti-parallel
Strand 3
A
7 12parallel
Strand 4
A
83 87parallel
Strand 5
A
129 133parallel
Strand 6
A
168 169parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
54 57anti-parallel
Strand 3
B
7 12parallel
Strand 4
B
83 87parallel
Strand 5
B
129 133parallel
Strand 6
B
168 169parallel
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