Analysis of interatomic Contacts of Structural Units in PDB entry:
3RJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RJU entry

There is 1 chain in PDB entry 3RJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2LYS 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 3RJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 18Right-handed alpha
Helix 2
2
A
60 75Right-handed alpha
Helix 3
3
A
83 88Right-handed 310
Helix 4
4
A
104 110Right-handed alpha
Helix 5
5
A
133 142Right-handed alpha
Helix 6
6
A
158 173Right-handed alpha
Helix 7
7
A
175 184Right-handed alpha
Helix 8
8
A
184 189Right-handed alpha
Helix 9
9
A
198 203Right-handed alpha
Helix 10
10
A
217 221Right-handed 310
Helix 11
11
A
229 239Right-handed alpha
Helix 12
12
A
251 256Right-handed alpha
Helix 13
13
A
263 265Right-handed 310
Helix 14
14
A
314 316Right-handed 310
Helix 15
15
A
332 347Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3RJU. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 39first strand
Strand 2
A
22 29anti-parallel
Strand 3
A
318 325anti-parallel
Strand 4
A
306 313anti-parallel
Strand 5
A
296 303anti-parallel
Strand 6
A
285 287anti-parallel
Strand 7
A
279 281anti-parallel
Strand 8
A
258 261anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
227 228anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 155first strand
Strand 2
A
267 269parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il