Analysis of interatomic Contacts of Structural Units in PDB entry:
3RL8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RL8 entry

There are 6 chains in PDB entry 3RL8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 316TYR 409
B
 LYS 316PRO 405
C
 LYS 316MET 410
D
 LYS 316TYR 409
E
 LYS 316PRO 405
F
 TYR 2838VAL 2843
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3RL8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
357 363Right-handed alpha
Helix 2
2
A
383 393Right-handed alpha
Helix 3
3
B
357 363Right-handed alpha
Helix 4
4
B
383 393Right-handed alpha
Helix 5
5
C
357 363Right-handed alpha
Helix 6
6
C
383 393Right-handed alpha
Helix 7
7
D
357 363Right-handed alpha
Helix 8
8
D
383 393Right-handed alpha
Helix 9
9
E
357 363Right-handed alpha
Helix 10
10
E
383 393Right-handed alpha
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There are 10 sheets in PDB entry 3RL8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 323first strand
Strand 2
A
397 403anti-parallel
Strand 3
A
370 374anti-parallel
Strand 4
A
348 353anti-parallel
Strand 5
A
331 335anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 323first strand
Strand 2
A
397 403anti-parallel
Strand 3
A
370 374anti-parallel
Strand 4
A
377 378anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 323first strand
Strand 2
B
397 403anti-parallel
Strand 3
B
370 374anti-parallel
Strand 4
B
348 353anti-parallel
Strand 5
B
331 335anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 323first strand
Strand 2
B
397 403anti-parallel
Strand 3
B
370 374anti-parallel
Strand 4
B
377 378anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
317 323first strand
Strand 2
C
397 403anti-parallel
Strand 3
C
370 374anti-parallel
Strand 4
C
348 353anti-parallel
Strand 5
C
331 335anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
317 323first strand
Strand 2
C
397 403anti-parallel
Strand 3
C
370 374anti-parallel
Strand 4
C
377 378anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
317 323first strand
Strand 2
D
397 403anti-parallel
Strand 3
D
370 374anti-parallel
Strand 4
D
348 353anti-parallel
Strand 5
D
331 335anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
317 323first strand
Strand 2
D
397 403anti-parallel
Strand 3
D
370 374anti-parallel
Strand 4
D
377 378anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
317 323first strand
Strand 2
E
397 403anti-parallel
Strand 3
E
370 374anti-parallel
Strand 4
E
348 353anti-parallel
Strand 5
E
331 335anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
317 323first strand
Strand 2
E
397 403anti-parallel
Strand 3
E
370 374anti-parallel
Strand 4
E
377 378anti-parallel
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