Analysis of interatomic Contacts of Structural Units in PDB entry:
3RMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RMH entry

There are 2 chains in PDB entry 3RMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 611ARG 740
B
 SER 606ARG 740
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 3RMH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
619 626Right-handed alpha
Helix 2
2
A
667 671Right-handed 310
Helix 3
3
A
678 687Right-handed alpha
Helix 4
4
A
692 700Right-handed 310
Helix 5
5
A
727 740Right-handed alpha
Helix 6
6
B
619 624Right-handed alpha
Helix 7
7
B
667 671Right-handed 310
Helix 8
8
B
678 687Right-handed alpha
Helix 9
9
B
692 700Right-handed 310
Helix 10
10
B
727 739Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3RMH. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
613 616first strand
Strand 2
A
632 646parallel
Strand 3
A
703 711anti-parallel
Strand 4
A
720 723anti-parallel
Strand 5
A
672 677parallel
Strand 6
A
650 656anti-parallel
Strand 7
A
632 646anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
613 615first strand
Strand 2
B
632 646parallel
Strand 3
B
703 712anti-parallel
Strand 4
B
719 723anti-parallel
Strand 5
B
672 677parallel
Strand 6
B
650 656anti-parallel
Strand 7
B
632 646anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il