Analysis of interatomic Contacts of Structural Units in PDB entry:
3RMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RMK entry

There are 6 chains in PDB entry 3RMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LYS 493
B
 SER 2SER 305
C
 SER 2PHE 82
D
 ALA 2CYS 492
E
 SER 2ASP 307
F
 SER 2GLU 84
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are107 helices in PDB entry 3RMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 14Right-handed alpha
Helix 2
2
A
24 29Right-handed alpha
Helix 3
3
A
30 35Right-handed alpha
Helix 4
4
A
40 45Right-handed alpha
Helix 5
5
A
54 76Right-handed alpha
Helix 6
6
A
77 79Right-handed 310
Helix 7
7
A
80 85Right-handed alpha
Helix 8
8
A
86 118Right-handed alpha
Helix 9
9
A
120 147Right-handed alpha
Helix 10
10
A
152 155Right-handed 310
Helix 11
11
A
156 161Right-handed alpha
Helix 12
12
A
162 164Right-handed 310
Helix 13
13
A
166 180Right-handed alpha
Helix 14
14
A
184 192Right-handed alpha
Helix 15
15
A
200 215Right-handed alpha
Helix 16
16
A
217 236Right-handed alpha
Helix 17
17
A
237 248Right-handed alpha
Helix 18
18
A
250 273Right-handed alpha
Helix 19
19
A
273 279Right-handed alpha
Helix 20
20
A
282 286Right-handed 310
Helix 21
21
A
289 297Right-handed alpha
Helix 22
22
A
297 310Right-handed alpha
Helix 23
23
A
316 324Right-handed alpha
Helix 24
24
A
326 338Right-handed alpha
Helix 25
25
A
339 342Right-handed 310
Helix 26
26
A
351 362Right-handed alpha
Helix 27
27
A
368 382Right-handed alpha
Helix 28
28
A
384 389Right-handed 310
Helix 29
29
A
408 412Right-handed 310
Helix 30
30
A
430 440Right-handed alpha
Helix 31
31
A
440 445Right-handed alpha
Helix 32
32
A
449 457Right-handed alpha
Helix 33
33
A
463 471Right-handed alpha
Helix 34
34
A
486 493Right-handed 310
Helix 35
35
B
23 30Right-handed alpha
Helix 36
36
B
33 37Right-handed 310
Helix 37
37
B
49 59Right-handed alpha
Helix 38
38
B
68 72Right-handed 310
Helix 39
39
B
79 104Right-handed alpha
Helix 40
40
B
105 110Right-handed 310
Helix 41
41
B
113 122Right-handed alpha
Helix 42
42
B
124 143Right-handed alpha
Helix 43
43
B
145 177Right-handed alpha
Helix 44
44
B
185 193Right-handed alpha
Helix 45
45
B
193 207Right-handed alpha
Helix 46
46
B
211 222Right-handed alpha
Helix 47
47
B
222 231Right-handed alpha
Helix 48
48
B
231 242Right-handed alpha
Helix 49
49
B
245 273Right-handed alpha
Helix 50
50
B
274 276Right-handed 310
Helix 51
51
B
277 305Right-handed alpha
Helix 52
52
C
26 37Right-handed alpha
Helix 53
53
C
66 71Right-handed alpha
Helix 54
54
D
5 14Right-handed alpha
Helix 55
55
D
24 29Right-handed alpha
Helix 56
56
D
30 35Right-handed alpha
Helix 57
57
D
40 45Right-handed alpha
Helix 58
58
D
54 76Right-handed alpha
Helix 59
59
D
80 85Right-handed alpha
Helix 60
60
D
86 118Right-handed alpha
Helix 61
61
D
120 147Right-handed alpha
Helix 62
62
D
152 155Right-handed 310
Helix 63
63
D
156 161Right-handed alpha
Helix 64
64
D
162 164Right-handed 310
Helix 65
65
D
166 180Right-handed alpha
Helix 66
66
D
184 192Right-handed alpha
Helix 67
67
D
200 215Right-handed alpha
Helix 68
68
D
217 229Right-handed alpha
Helix 69
69
D
230 236Right-handed alpha
Helix 70
70
D
237 248Right-handed alpha
Helix 71
71
D
250 273Right-handed alpha
Helix 72
72
D
273 279Right-handed alpha
Helix 73
73
D
282 286Right-handed 310
Helix 74
74
D
289 298Right-handed alpha
Helix 75
75
D
298 310Right-handed alpha
Helix 76
76
D
316 324Right-handed alpha
Helix 77
77
D
326 338Right-handed alpha
Helix 78
78
D
339 342Right-handed 310
Helix 79
79
D
351 362Right-handed alpha
Helix 80
80
D
368 382Right-handed alpha
Helix 81
81
D
384 389Right-handed 310
Helix 82
82
D
408 412Right-handed 310
Helix 83
83
D
430 440Right-handed alpha
Helix 84
84
D
440 445Right-handed alpha
Helix 85
85
D
449 456Right-handed alpha
Helix 86
86
D
463 471Right-handed alpha
Helix 87
87
D
475 479Right-handed 310
Helix 88
88
D
486 492Right-handed 310
Helix 89
89
E
23 30Right-handed alpha
Helix 90
90
E
33 37Right-handed 310
Helix 91
91
E
49 59Right-handed alpha
Helix 92
92
E
68 72Right-handed 310
Helix 93
93
E
79 104Right-handed alpha
Helix 94
94
E
105 110Right-handed 310
Helix 95
95
E
113 122Right-handed alpha
Helix 96
96
E
124 143Right-handed alpha
Helix 97
97
E
145 177Right-handed alpha
Helix 98
98
E
185 193Right-handed alpha
Helix 99
99
E
193 207Right-handed alpha
Helix 100
100
E
211 222Right-handed alpha
Helix 101
101
E
222 231Right-handed alpha
Helix 102
102
E
231 242Right-handed alpha
Helix 103
103
E
245 273Right-handed alpha
Helix 104
104
E
274 276Right-handed 310
Helix 105
105
E
277 305Right-handed alpha
Helix 106
106
F
26 37Right-handed alpha
Helix 107
107
F
66 71Right-handed alpha
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There are 4 sheets in PDB entry 3RMK. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 421first strand
Strand 2
A
424 428anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 22first strand
Strand 2
C
3 10anti-parallel
Strand 3
C
77 81parallel
Strand 4
C
51 54anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
417 421first strand
Strand 2
D
424 428anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
16 22first strand
Strand 2
F
3 10anti-parallel
Strand 3
F
77 82parallel
Strand 4
F
50 54anti-parallel
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