Analysis of interatomic Contacts of Structural Units in PDB entry:
3RNE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RNE entry

There are 3 chains in PDB entry 3RNE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLN 492
B
 ALA 8GLY 329
C
 THR 3ASP 85
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 3RNE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 10Right-handed alpha
Helix 2
2
A
11 15Right-handed 310
Helix 3
3
A
24 29Right-handed alpha
Helix 4
4
A
30 35Right-handed alpha
Helix 5
5
A
40 45Right-handed alpha
Helix 6
6
A
54 77Right-handed alpha
Helix 7
7
A
78 85Right-handed 310
Helix 8
8
A
86 118Right-handed alpha
Helix 9
9
A
120 144Right-handed alpha
Helix 10
10
A
145 149Right-handed 310
Helix 11
11
A
152 155Right-handed 310
Helix 12
12
A
156 161Right-handed alpha
Helix 13
13
A
162 164Right-handed 310
Helix 14
14
A
166 180Right-handed alpha
Helix 15
15
A
184 192Right-handed alpha
Helix 16
16
A
200 215Right-handed alpha
Helix 17
17
A
217 229Right-handed alpha
Helix 18
18
A
230 236Right-handed alpha
Helix 19
19
A
237 248Right-handed alpha
Helix 20
20
A
250 273Right-handed alpha
Helix 21
21
A
273 279Right-handed alpha
Helix 22
22
A
282 286Right-handed 310
Helix 23
23
A
289 298Right-handed alpha
Helix 24
24
A
298 309Right-handed alpha
Helix 25
25
A
316 324Right-handed alpha
Helix 26
26
A
326 338Right-handed alpha
Helix 27
27
A
339 342Right-handed 310
Helix 28
28
A
351 362Right-handed alpha
Helix 29
29
A
368 382Right-handed alpha
Helix 30
30
A
384 389Right-handed 310
Helix 31
31
A
408 412Right-handed 310
Helix 32
32
A
430 439Right-handed alpha
Helix 33
33
A
440 444Right-handed 310
Helix 34
34
A
449 456Right-handed alpha
Helix 35
35
A
463 471Right-handed alpha
Helix 36
36
A
485 489Right-handed 310
Helix 37
37
B
15 19Right-handed 310
Helix 38
38
B
26 33Right-handed alpha
Helix 39
39
B
37 41Right-handed 310
Helix 40
40
B
52 62Right-handed alpha
Helix 41
41
B
71 75Right-handed 310
Helix 42
42
B
82 107Right-handed alpha
Helix 43
43
B
109 113Right-handed 310
Helix 44
44
B
114 125Right-handed alpha
Helix 45
45
B
127 146Right-handed alpha
Helix 46
46
B
148 180Right-handed alpha
Helix 47
47
B
188 196Right-handed alpha
Helix 48
48
B
196 210Right-handed alpha
Helix 49
49
B
214 224Right-handed alpha
Helix 50
50
B
225 235Right-handed alpha
Helix 51
51
B
235 245Right-handed alpha
Helix 52
52
B
247 276Right-handed alpha
Helix 53
53
B
280 305Right-handed alpha
Helix 54
54
B
309 327Right-handed alpha
Helix 55
55
C
26 37Right-handed alpha
Helix 56
56
C
67 71Right-handed 310
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There are 2 sheets in PDB entry 3RNE. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 421first strand
Strand 2
A
424 426anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 21first strand
Strand 2
C
4 10anti-parallel
Strand 3
C
78 84parallel
Strand 4
C
50 55anti-parallel
Strand 5
C
61 62anti-parallel
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