Analysis of interatomic Contacts of Structural Units in PDB entry:
3RNM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3RNM entry

There are 3 chains in PDB entry 3RNM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	PHE 474
B	PRO 4	PHE 474
C	GLN 3	ILE 406

There are 76 helices in PDB entry 3RNM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	15	28	Right-handed alpha
Helix 2	2	A	42	49	Right-handed alpha
Helix 3	3	A	49	68	Right-handed alpha
Helix 4	4	A	69	74	Right-handed alpha
Helix 5	5	A	84	111	Right-handed alpha
Helix 6	6	A	167	172	Right-handed alpha
Helix 7	7	A	187	201	Right-handed alpha
Helix 8	8	A	219	233	Right-handed alpha
Helix 9	9	A	288	293	Right-handed alpha
Helix 10	10	A	319	322	Right-handed 310
Helix 11	11	A	327	343	Right-handed alpha
Helix 12	12	A	350	354	Right-handed 310
Helix 13	13	A	370	376	Right-handed alpha
Helix 14	14	A	391	397	Right-handed alpha
Helix 15	15	A	424	439	Right-handed alpha
Helix 16	16	A	441	448	Right-handed alpha
Helix 17	17	A	455	469	Right-handed alpha
Helix 18	18	B	15	28	Right-handed alpha
Helix 19	19	B	42	49	Right-handed alpha
Helix 20	20	B	49	68	Right-handed alpha
Helix 21	21	B	68	74	Right-handed alpha
Helix 22	22	B	84	111	Right-handed alpha
Helix 23	23	B	167	172	Right-handed alpha
Helix 24	24	B	187	201	Right-handed alpha
Helix 25	25	B	219	233	Right-handed alpha
Helix 26	26	B	319	322	Right-handed 310
Helix 27	27	B	327	343	Right-handed alpha
Helix 28	28	B	350	354	Right-handed 310
Helix 29	29	B	370	376	Right-handed alpha
Helix 30	30	B	391	397	Right-handed alpha
Helix 31	31	B	424	438	Right-handed alpha
Helix 32	32	B	441	447	Right-handed alpha
Helix 33	33	B	455	469	Right-handed alpha
Helix 34	34	C	15	28	Right-handed alpha
Helix 35	35	C	42	49	Right-handed alpha
Helix 36	36	C	49	68	Right-handed alpha
Helix 37	37	C	68	74	Right-handed alpha
Helix 38	38	C	84	111	Right-handed alpha
Helix 39	39	C	167	172	Right-handed alpha
Helix 40	40	C	187	200	Right-handed alpha
Helix 41	41	C	219	234	Right-handed alpha
Helix 42	42	C	288	293	Right-handed alpha
Helix 43	43	C	319	322	Right-handed 310
Helix 44	44	C	327	343	Right-handed alpha
Helix 45	45	C	350	354	Right-handed 310
Helix 46	46	C	370	377	Right-handed alpha
Helix 47	47	C	391	397	Right-handed alpha
Helix 48	48	C	424	438	Right-handed alpha
Helix 49	49	C	441	447	Right-handed alpha
Helix 50	50	C	456	468	Right-handed alpha
Helix 51	51	D	15	28	Right-handed alpha
Helix 52	52	D	42	49	Right-handed alpha
Helix 53	53	D	49	68	Right-handed alpha
Helix 54	54	D	71	74	Right-handed 310
Helix 55	55	D	84	110	Right-handed alpha
Helix 56	56	D	167	172	Right-handed alpha
Helix 57	57	D	187	201	Right-handed alpha
Helix 58	58	D	219	233	Right-handed alpha
Helix 59	59	D	289	293	Right-handed 310
Helix 60	60	D	319	322	Right-handed 310
Helix 61	61	D	327	343	Right-handed alpha
Helix 62	62	D	350	354	Right-handed 310
Helix 63	63	D	370	377	Right-handed alpha
Helix 64	64	D	391	397	Right-handed alpha
Helix 65	65	D	424	438	Right-handed alpha
Helix 66	66	D	441	447	Right-handed alpha
Helix 67	67	D	455	468	Right-handed alpha
Helix 68	68	E	113	123	Right-handed alpha
Helix 69	69	E	126	130	Right-handed 310
Helix 70	70	E	134	138	Right-handed 310
Helix 71	71	E	140	154	Right-handed alpha
Helix 72	72	E	155	157	Right-handed 310
Helix 73	73	F	113	123	Right-handed alpha
Helix 74	74	F	126	130	Right-handed 310
Helix 75	75	F	134	138	Right-handed 310
Helix 76	76	F	140	153	Right-handed alpha

There are 28 sheets in PDB entry 3RNM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	116	first strand
Strand 2	A	32	36	parallel
Strand 3	A	5	12	parallel
Strand 4	A	136	146	parallel
Strand 5	A	126	130	anti-parallel
Strand 6	A	118	123	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	116	first strand
Strand 2	A	32	36	parallel
Strand 3	A	5	12	parallel
Strand 4	A	136	146	parallel
Strand 5	A	315	317	parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	B	81	83	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	B	76	77	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	280	282	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	166	first strand
Strand 2	A	273	276	parallel
Strand 3	A	180	184	parallel
Strand 4	A	203	207	parallel
Strand 5	A	236	238	parallel

Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	248	first strand
Strand 2	A	254	260	anti-parallel
Strand 3	A	267	271	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	358	first strand
Strand 2	A	363	368	anti-parallel
Strand 3	A	415	422	anti-parallel
Strand 4	A	403	409	anti-parallel
Strand 5	A	381	387	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	115	first strand
Strand 2	B	32	35	parallel
Strand 3	B	5	12	parallel
Strand 4	B	136	146	parallel
Strand 5	B	126	130	anti-parallel
Strand 6	B	118	123	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	115	first strand
Strand 2	B	32	35	parallel
Strand 3	B	5	12	parallel
Strand 4	B	136	146	parallel
Strand 5	B	315	317	parallel

Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	280	282	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	166	first strand
Strand 2	B	273	276	parallel
Strand 3	B	180	184	parallel
Strand 4	B	203	208	parallel
Strand 5	B	236	239	parallel

Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	248	first strand
Strand 2	B	254	259	anti-parallel
Strand 3	B	267	271	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	358	first strand
Strand 2	B	363	368	anti-parallel
Strand 3	B	415	422	anti-parallel
Strand 4	B	403	409	anti-parallel
Strand 5	B	381	387	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	116	first strand
Strand 2	C	32	36	parallel
Strand 3	C	5	12	parallel
Strand 4	C	136	146	parallel
Strand 5	C	126	130	anti-parallel
Strand 6	C	118	123	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	116	first strand
Strand 2	C	32	36	parallel
Strand 3	C	5	12	parallel
Strand 4	C	136	146	parallel
Strand 5	C	315	317	parallel

Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	D	81	83	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	83	first strand
Strand 2	D	76	78	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	152	first strand
Strand 2	C	280	282	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	166	first strand
Strand 2	C	273	276	parallel
Strand 3	C	180	184	parallel
Strand 4	C	203	207	parallel
Strand 5	C	236	238	parallel

Back to list of sheets
Back to top of page

There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	241	248	first strand
Strand 2	C	254	260	anti-parallel
Strand 3	C	267	271	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	356	358	first strand
Strand 2	C	363	368	anti-parallel
Strand 3	C	415	422	anti-parallel
Strand 4	C	403	409	anti-parallel
Strand 5	C	381	387	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	116	first strand
Strand 2	D	32	36	parallel
Strand 3	D	5	12	parallel
Strand 4	D	136	146	parallel
Strand 5	D	126	130	anti-parallel
Strand 6	D	118	123	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	116	first strand
Strand 2	D	32	36	parallel
Strand 3	D	5	12	parallel
Strand 4	D	136	146	parallel
Strand 5	D	315	317	parallel

Back to list of sheets
Back to top of page

There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	152	first strand
Strand 2	D	280	282	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	166	first strand
Strand 2	D	273	276	parallel
Strand 3	D	180	184	parallel
Strand 4	D	203	207	parallel
Strand 5	D	236	238	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	248	first strand
Strand 2	D	254	259	anti-parallel
Strand 3	D	267	271	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	356	358	first strand
Strand 2	D	363	368	anti-parallel
Strand 3	D	415	422	anti-parallel
Strand 4	D	403	409	anti-parallel
Strand 5	D	381	387	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3RNM

Analysis of interatomic Contacts of Structural Units in PDB entry:
3RNM