Analysis of interatomic Contacts of Structural Units in PDB entry:
3RNY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RNY entry

There are 2 chains in PDB entry 3RNY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 418SER 707
B
 VAL 419SER 708
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3RNY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
456 467Right-handed alpha
Helix 2
2
A
496 502Right-handed alpha
Helix 3
3
A
508 529Right-handed alpha
Helix 4
4
A
537 539Right-handed 310
Helix 5
5
A
549 551Right-handed 310
Helix 6
6
A
573 577Right-handed 310
Helix 7
7
A
584 610Right-handed alpha
Helix 8
8
A
621 632Right-handed alpha
Helix 9
9
A
638 644Right-handed 310
Helix 10
10
A
645 656Right-handed alpha
Helix 11
11
A
665 670Right-handed alpha
Helix 12
12
A
672 677Right-handed alpha
Helix 13
13
A
678 681Right-handed 310
Helix 14
14
A
690 707Right-handed alpha
Helix 15
15
B
456 467Right-handed alpha
Helix 16
16
B
496 502Right-handed alpha
Helix 17
17
B
508 529Right-handed alpha
Helix 18
18
B
537 539Right-handed 310
Helix 19
19
B
549 551Right-handed 310
Helix 20
20
B
586 610Right-handed alpha
Helix 21
21
B
621 632Right-handed alpha
Helix 22
22
B
638 644Right-handed 310
Helix 23
23
B
645 656Right-handed alpha
Helix 24
24
B
665 670Right-handed alpha
Helix 25
25
B
672 677Right-handed alpha
Helix 26
26
B
678 681Right-handed 310
Helix 27
27
B
690 707Right-handed alpha
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There are 6 sheets in PDB entry 3RNY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 435first strand
Strand 2
A
444 446anti-parallel
Strand 3
A
488 489anti-parallel
Strand 4
A
475 477anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
562 563anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 543first strand
Strand 2
A
553 555anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
433 436first strand
Strand 2
B
443 450anti-parallel
Strand 3
B
484 489anti-parallel
Strand 4
B
475 480anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
531 532first strand
Strand 2
B
562 563anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
541 543first strand
Strand 2
B
553 555anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il