Analysis of interatomic Contacts of Structural Units in PDB entry:
3RO8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3RO8 entry

There are 4 chains in PDB entry 3RO8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	TRP 305
B	SER 2	TRP 305
C	GLY 1	TRP 305
D	SER 2	GLN 287

There are110 helices in PDB entry 3RO8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	6	11	Right-handed alpha
Helix 2	2	A	22	26	Right-handed 310
Helix 3	3	A	27	38	Right-handed alpha
Helix 4	4	A	48	53	Right-handed alpha
Helix 5	5	A	61	74	Right-handed alpha
Helix 6	6	A	90	93	Right-handed 310
Helix 7	7	A	107	127	Right-handed alpha
Helix 8	8	A	128	130	Right-handed 310
Helix 9	9	A	150	154	Right-handed 310
Helix 10	10	A	157	164	Right-handed alpha
Helix 11	11	A	166	182	Right-handed alpha
Helix 12	12	A	198	220	Right-handed alpha
Helix 13	13	A	240	253	Right-handed alpha
Helix 14	14	A	273	295	Right-handed alpha
Helix 15	15	B	6	11	Right-handed alpha
Helix 16	16	B	22	26	Right-handed 310
Helix 17	17	B	27	38	Right-handed alpha
Helix 18	18	B	48	53	Right-handed alpha
Helix 19	19	B	61	74	Right-handed alpha
Helix 20	20	B	90	93	Right-handed 310
Helix 21	21	B	107	127	Right-handed alpha
Helix 22	22	B	128	130	Right-handed 310
Helix 23	23	B	157	164	Right-handed alpha
Helix 24	24	B	166	182	Right-handed alpha
Helix 25	25	B	198	220	Right-handed alpha
Helix 26	26	B	240	253	Right-handed alpha
Helix 27	27	B	273	295	Right-handed alpha
Helix 28	28	C	6	11	Right-handed alpha
Helix 29	29	C	22	26	Right-handed 310
Helix 30	30	C	27	38	Right-handed alpha
Helix 31	31	C	48	53	Right-handed alpha
Helix 32	32	C	61	74	Right-handed alpha
Helix 33	33	C	90	93	Right-handed 310
Helix 34	34	C	107	127	Right-handed alpha
Helix 35	35	C	128	130	Right-handed 310
Helix 36	36	C	149	154	Right-handed alpha
Helix 37	37	C	157	164	Right-handed alpha
Helix 38	38	C	166	182	Right-handed alpha
Helix 39	39	C	198	220	Right-handed alpha
Helix 40	40	C	240	253	Right-handed alpha
Helix 41	41	C	273	295	Right-handed alpha
Helix 42	42	D	6	11	Right-handed alpha
Helix 43	43	D	22	26	Right-handed 310
Helix 44	44	D	27	38	Right-handed alpha
Helix 45	45	D	48	53	Right-handed alpha
Helix 46	46	D	61	74	Right-handed alpha
Helix 47	47	D	90	93	Right-handed 310
Helix 48	48	D	107	127	Right-handed alpha
Helix 49	49	D	128	130	Right-handed 310
Helix 50	50	D	149	154	Right-handed alpha
Helix 51	51	D	157	164	Right-handed alpha
Helix 52	52	D	166	182	Right-handed alpha
Helix 53	53	D	198	220	Right-handed alpha
Helix 54	54	D	240	253	Right-handed alpha
Helix 55	55	D	273	295	Right-handed alpha
Helix 56	56	E	6	11	Right-handed alpha
Helix 57	57	E	22	26	Right-handed 310
Helix 58	58	E	27	38	Right-handed alpha
Helix 59	59	E	48	53	Right-handed alpha
Helix 60	60	E	61	74	Right-handed alpha
Helix 61	61	E	90	93	Right-handed 310
Helix 62	62	E	107	127	Right-handed alpha
Helix 63	63	E	128	130	Right-handed 310
Helix 64	64	E	149	154	Right-handed alpha
Helix 65	65	E	157	164	Right-handed alpha
Helix 66	66	E	166	182	Right-handed alpha
Helix 67	67	E	198	220	Right-handed alpha
Helix 68	68	E	240	254	Right-handed alpha
Helix 69	69	E	273	295	Right-handed alpha
Helix 70	70	F	6	11	Right-handed alpha
Helix 71	71	F	22	26	Right-handed 310
Helix 72	72	F	27	38	Right-handed alpha
Helix 73	73	F	48	53	Right-handed alpha
Helix 74	74	F	61	74	Right-handed alpha
Helix 75	75	F	90	93	Right-handed 310
Helix 76	76	F	107	127	Right-handed alpha
Helix 77	77	F	128	130	Right-handed 310
Helix 78	78	F	149	154	Right-handed alpha
Helix 79	79	F	157	164	Right-handed alpha
Helix 80	80	F	166	182	Right-handed alpha
Helix 81	81	F	198	220	Right-handed alpha
Helix 82	82	F	240	253	Right-handed alpha
Helix 83	83	F	273	295	Right-handed alpha
Helix 84	84	G	6	11	Right-handed alpha
Helix 85	85	G	22	26	Right-handed 310
Helix 86	86	G	27	38	Right-handed alpha
Helix 87	87	G	48	53	Right-handed alpha
Helix 88	88	G	61	74	Right-handed alpha
Helix 89	89	G	90	93	Right-handed 310
Helix 90	90	G	107	127	Right-handed alpha
Helix 91	91	G	128	130	Right-handed 310
Helix 92	92	G	149	154	Right-handed alpha
Helix 93	93	G	157	164	Right-handed alpha
Helix 94	94	G	166	182	Right-handed alpha
Helix 95	95	G	198	219	Right-handed alpha
Helix 96	96	G	240	253	Right-handed alpha
Helix 97	97	G	273	295	Right-handed alpha
Helix 98	98	H	6	11	Right-handed alpha
Helix 99	99	H	22	26	Right-handed 310
Helix 100	100	H	27	38	Right-handed alpha
Helix 101	101	H	48	53	Right-handed alpha
Helix 102	102	H	61	74	Right-handed alpha
Helix 103	103	H	90	93	Right-handed 310
Helix 104	104	H	107	127	Right-handed alpha
Helix 105	105	H	128	130	Right-handed 310
Helix 106	106	H	157	164	Right-handed alpha
Helix 107	107	H	166	182	Right-handed alpha
Helix 108	108	H	198	220	Right-handed alpha
Helix 109	109	H	240	253	Right-handed alpha
Helix 110	110	H	273	295	Right-handed alpha

There are 16 sheets in PDB entry 3RO8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	236	first strand
Strand 2	A	257	266	parallel
Strand 3	A	299	304	parallel
Strand 4	A	16	21	parallel
Strand 5	A	40	43	parallel
Strand 6	A	77	84	parallel
Strand 7	A	132	137	parallel
Strand 8	A	188	193	parallel
Strand 9	A	228	231	parallel
Strand 10	A	257	266	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	97	first strand
Strand 2	A	103	105	anti-parallel

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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	236	first strand
Strand 2	B	257	266	parallel
Strand 3	B	299	304	parallel
Strand 4	B	16	21	parallel
Strand 5	B	40	43	parallel
Strand 6	B	77	84	parallel
Strand 7	B	132	137	parallel
Strand 8	B	188	193	parallel
Strand 9	B	228	231	parallel
Strand 10	B	257	266	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	97	first strand
Strand 2	B	103	105	anti-parallel

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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	236	first strand
Strand 2	C	257	266	parallel
Strand 3	C	299	304	parallel
Strand 4	C	16	21	parallel
Strand 5	C	40	43	parallel
Strand 6	C	77	84	parallel
Strand 7	C	132	137	parallel
Strand 8	C	188	193	parallel
Strand 9	C	228	231	parallel
Strand 10	C	257	266	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	97	first strand
Strand 2	C	103	105	anti-parallel

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There are 10 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	236	first strand
Strand 2	D	257	266	parallel
Strand 3	D	299	304	parallel
Strand 4	D	16	21	parallel
Strand 5	D	40	43	parallel
Strand 6	D	77	84	parallel
Strand 7	D	132	137	parallel
Strand 8	D	188	193	parallel
Strand 9	D	228	231	parallel
Strand 10	D	257	266	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	97	first strand
Strand 2	D	103	105	anti-parallel

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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	234	236	first strand
Strand 2	E	257	266	parallel
Strand 3	E	299	304	parallel
Strand 4	E	16	21	parallel
Strand 5	E	40	43	parallel
Strand 6	E	77	84	parallel
Strand 7	E	132	137	parallel
Strand 8	E	188	193	parallel
Strand 9	E	228	231	parallel
Strand 10	E	257	266	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	97	first strand
Strand 2	E	103	105	anti-parallel

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There are 10 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	234	236	first strand
Strand 2	F	257	266	parallel
Strand 3	F	299	304	parallel
Strand 4	F	16	21	parallel
Strand 5	F	40	43	parallel
Strand 6	F	77	84	parallel
Strand 7	F	132	137	parallel
Strand 8	F	188	193	parallel
Strand 9	F	228	231	parallel
Strand 10	F	257	266	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	97	first strand
Strand 2	F	103	105	anti-parallel

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There are 10 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	234	236	first strand
Strand 2	G	257	266	parallel
Strand 3	G	299	304	parallel
Strand 4	G	16	21	parallel
Strand 5	G	40	43	parallel
Strand 6	G	77	84	parallel
Strand 7	G	132	137	parallel
Strand 8	G	188	193	parallel
Strand 9	G	228	231	parallel
Strand 10	G	257	266	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	97	first strand
Strand 2	G	103	105	anti-parallel

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There are 10 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	234	236	first strand
Strand 2	H	257	266	parallel
Strand 3	H	299	304	parallel
Strand 4	H	16	21	parallel
Strand 5	H	40	43	parallel
Strand 6	H	77	84	parallel
Strand 7	H	132	137	parallel
Strand 8	H	188	193	parallel
Strand 9	H	228	231	parallel
Strand 10	H	257	266	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	95	97	first strand
Strand 2	H	103	105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3RO8

Analysis of interatomic Contacts of Structural Units in PDB entry:
3RO8