Analysis of interatomic Contacts of Structural Units in PDB entry:
3RP6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RP6 entry

There is 1 chain in PDB entry 3RP6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -10GLY 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 3RP6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 22Right-handed alpha
Helix 2
2
A
45 55Right-handed alpha
Helix 3
3
A
57 65Right-handed alpha
Helix 4
4
A
87 95Right-handed alpha
Helix 5
5
A
103 115Right-handed alpha
Helix 6
6
A
160 166Right-handed alpha
Helix 7
7
A
233 242Right-handed alpha
Helix 8
8
A
246 256Right-handed alpha
Helix 9
9
A
284 287Right-handed 310
Helix 10
10
A
296 312Right-handed alpha
Helix 11
11
A
317 348Right-handed alpha
Helix 12
12
A
351 364Right-handed alpha
Helix 13
13
A
367 380Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3RP6. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
25 29parallel
Strand 3
A
2 6parallel
Strand 4
A
149 152parallel
Strand 5
A
280 282parallel
Strand 6
A
276 277anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
99 102anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 86first strand
Strand 2
A
70 75anti-parallel
Strand 3
A
194 200parallel
Strand 4
A
203 210anti-parallel
Strand 5
A
214 222anti-parallel
Strand 6
A
172 184anti-parallel
Strand 7
A
262 268anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 130first strand
Strand 2
A
135 139anti-parallel
Strand 3
A
144 147anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il