Analysis of interatomic Contacts of Structural Units in PDB entry:
3RP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RP8 entry

There is 1 chain in PDB entry 3RP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0GLY 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3RP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 22Right-handed alpha
Helix 2
2
A
45 55Right-handed alpha
Helix 3
3
A
57 65Right-handed alpha
Helix 4
4
A
87 95Right-handed alpha
Helix 5
5
A
103 115Right-handed alpha
Helix 6
6
A
160 166Right-handed alpha
Helix 7
7
A
233 242Right-handed alpha
Helix 8
8
A
246 256Right-handed alpha
Helix 9
9
A
257 261Right-handed 310
Helix 10
10
A
284 287Right-handed 310
Helix 11
11
A
291 295Right-handed 310
Helix 12
12
A
296 314Right-handed alpha
Helix 13
13
A
317 348Right-handed alpha
Helix 14
14
A
351 364Right-handed alpha
Helix 15
15
A
367 380Right-handed alpha
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There are 4 sheets in PDB entry 3RP8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
25 30parallel
Strand 3
A
2 6parallel
Strand 4
A
149 152parallel
Strand 5
A
280 282parallel
Strand 6
A
276 277anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
99 102anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 86first strand
Strand 2
A
70 75anti-parallel
Strand 3
A
194 200parallel
Strand 4
A
203 210anti-parallel
Strand 5
A
214 222anti-parallel
Strand 6
A
172 184anti-parallel
Strand 7
A
262 268anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 131first strand
Strand 2
A
134 139anti-parallel
Strand 3
A
144 147anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il