Analysis of interatomic Contacts of Structural Units in PDB entry:
3RP9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RP9 entry

There is 1 chain in PDB entry 3RP9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 45ARG 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3RP9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
92 109Right-handed alpha
Helix 2
2
A
143 149Right-handed alpha
Helix 3
3
A
154 175Right-handed alpha
Helix 4
4
A
183 185Right-handed 310
Helix 5
5
A
251 256Right-handed alpha
Helix 6
6
A
263 279Right-handed alpha
Helix 7
7
A
287 291Right-handed 310
Helix 8
8
A
317 332Right-handed alpha
Helix 9
9
A
335 341Right-handed alpha
Helix 10
10
A
344 352Right-handed alpha
Helix 11
11
A
361 366Right-handed 310
Helix 12
12
A
370 381Right-handed alpha
Helix 13
13
A
390 397Right-handed alpha
Helix 14
14
A
398 401Right-handed 310
Helix 15
15
A
405 409Right-handed 310
Helix 16
16
A
427 440Right-handed alpha
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There are 2 sheets in PDB entry 3RP9. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
69 74anti-parallel
Strand 3
A
80 86anti-parallel
Strand 4
A
132 136anti-parallel
Strand 5
A
117 120anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
187 189anti-parallel
Strand 3
A
195 197anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il