Analysis of interatomic Contacts of Structural Units in PDB entry:
3RPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RPD entry

There are 4 chains in PDB entry 3RPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 10ARG 354
B
 ALA 13LEU 353
A
 MSE 356MSE 356
B
 MSE 356MSE 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3RPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 64Right-handed alpha
Helix 2
2
A
80 86Right-handed alpha
Helix 3
3
A
122 133Right-handed alpha
Helix 4
4
A
143 149Right-handed alpha
Helix 5
5
A
158 180Right-handed alpha
Helix 6
6
A
190 194Right-handed 310
Helix 7
7
A
195 202Right-handed alpha
Helix 8
8
A
202 212Right-handed alpha
Helix 9
9
A
228 236Right-handed alpha
Helix 10
10
A
243 247Right-handed 310
Helix 11
11
A
248 255Right-handed alpha
Helix 12
12
A
270 278Right-handed 310
Helix 13
13
A
296 309Right-handed alpha
Helix 14
14
A
312 314Right-handed 310
Helix 15
15
A
328 351Right-handed alpha
Helix 16
16
B
42 64Right-handed alpha
Helix 17
17
B
80 86Right-handed alpha
Helix 18
18
B
122 133Right-handed alpha
Helix 19
19
B
143 149Right-handed alpha
Helix 20
20
B
158 180Right-handed alpha
Helix 21
21
B
190 194Right-handed 310
Helix 22
22
B
195 202Right-handed alpha
Helix 23
23
B
202 212Right-handed alpha
Helix 24
24
B
228 236Right-handed alpha
Helix 25
25
B
243 247Right-handed 310
Helix 26
26
B
248 255Right-handed alpha
Helix 27
27
B
270 278Right-handed 310
Helix 28
28
B
296 309Right-handed alpha
Helix 29
29
B
312 314Right-handed 310
Helix 30
30
B
328 352Right-handed alpha
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There are 4 sheets in PDB entry 3RPD. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 100first strand
Strand 2
A
104 116anti-parallel
Strand 3
A
152 153parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 142first strand
Strand 2
A
184 188parallel
Strand 3
A
217 222parallel
Strand 4
A
259 262parallel
Strand 5
A
281 285parallel
Strand 6
A
316 319parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 100first strand
Strand 2
B
104 116anti-parallel
Strand 3
B
152 153parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 142first strand
Strand 2
B
184 188parallel
Strand 3
B
217 222parallel
Strand 4
B
259 262parallel
Strand 5
B
281 285parallel
Strand 6
B
316 319parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il