Analysis of interatomic Contacts of Structural Units in PDB entry:
3RPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RPM entry

There are 2 chains in PDB entry 3RPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 181ALA 630
B
 ASN 181ASN 609
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 3RPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
200 215Right-handed alpha
Helix 2
2
A
245 261Right-handed alpha
Helix 3
3
A
271 284Right-handed alpha
Helix 4
4
A
298 308Right-handed alpha
Helix 5
5
A
330 349Right-handed alpha
Helix 6
6
A
370 381Right-handed alpha
Helix 7
7
A
389 408Right-handed alpha
Helix 8
8
A
420 424Right-handed 310
Helix 9
9
A
450 457Right-handed alpha
Helix 10
10
A
465 469Right-handed 310
Helix 11
11
A
483 494Right-handed alpha
Helix 12
12
A
526 541Right-handed alpha
Helix 13
13
A
549 558Right-handed alpha
Helix 14
14
A
562 566Right-handed 310
Helix 15
15
A
567 583Right-handed alpha
Helix 16
16
A
589 591Right-handed 310
Helix 17
17
A
592 609Right-handed alpha
Helix 18
18
A
613 629Right-handed alpha
Helix 19
19
B
200 215Right-handed alpha
Helix 20
20
B
245 261Right-handed alpha
Helix 21
21
B
271 284Right-handed alpha
Helix 22
22
B
298 308Right-handed alpha
Helix 23
23
B
330 349Right-handed alpha
Helix 24
24
B
370 381Right-handed alpha
Helix 25
25
B
389 408Right-handed alpha
Helix 26
26
B
420 424Right-handed 310
Helix 27
27
B
450 457Right-handed alpha
Helix 28
28
B
465 469Right-handed 310
Helix 29
29
B
483 494Right-handed alpha
Helix 30
30
B
526 541Right-handed alpha
Helix 31
31
B
551 558Right-handed alpha
Helix 32
32
B
570 583Right-handed alpha
Helix 33
33
B
589 591Right-handed 310
Helix 34
34
B
592 609Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3RPM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 471first strand
Strand 2
A
511 517parallel
Strand 3
A
461 463parallel
Strand 4
A
435 438parallel
Strand 5
A
411 415parallel
Strand 6
A
354 358parallel
Strand 7
A
287 294parallel
Strand 8
A
218 224parallel
Strand 9
A
187 193parallel
Strand 10
A
511 517parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
269 270parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
242 244anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 317first strand
Strand 2
A
320 326anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
470 471first strand
Strand 2
B
511 517parallel
Strand 3
B
461 463parallel
Strand 4
B
435 438parallel
Strand 5
B
411 415parallel
Strand 6
B
354 358parallel
Strand 7
B
287 294parallel
Strand 8
B
218 224parallel
Strand 9
B
187 193parallel
Strand 10
B
511 517parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 231first strand
Strand 2
B
269 270parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 239first strand
Strand 2
B
242 244anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 317first strand
Strand 2
B
320 326anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il