Analysis of interatomic Contacts of Structural Units in PDB entry:
3RPN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RPN entry

There are 6 chains in PDB entry 3RPN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2ALA 221
B
 GLY 2ALA 221
C
 GLY 2ALA 221
D
 GLY 2ALA 221
E
 GLY 2ALA 221
F
 GLY 2THR 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 3RPN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 30Right-handed alpha
Helix 2
2
A
43 52Right-handed alpha
Helix 3
3
A
55 58Right-handed 310
Helix 4
4
A
59 78Right-handed alpha
Helix 5
5
A
87 95Right-handed alpha
Helix 6
6
A
96 110Right-handed alpha
Helix 7
7
A
113 127Right-handed alpha
Helix 8
8
A
134 145Right-handed alpha
Helix 9
9
A
148 157Right-handed alpha
Helix 10
10
A
161 178Right-handed alpha
Helix 11
11
A
202 211Right-handed alpha
Helix 12
12
B
16 30Right-handed alpha
Helix 13
13
B
43 52Right-handed alpha
Helix 14
14
B
55 58Right-handed 310
Helix 15
15
B
59 78Right-handed alpha
Helix 16
16
B
87 95Right-handed alpha
Helix 17
17
B
96 110Right-handed alpha
Helix 18
18
B
113 127Right-handed alpha
Helix 19
19
B
134 145Right-handed alpha
Helix 20
20
B
148 157Right-handed alpha
Helix 21
21
B
161 178Right-handed alpha
Helix 22
22
B
202 211Right-handed alpha
Helix 23
23
C
16 30Right-handed alpha
Helix 24
24
C
43 52Right-handed alpha
Helix 25
25
C
55 58Right-handed 310
Helix 26
26
C
59 78Right-handed alpha
Helix 27
27
C
87 95Right-handed alpha
Helix 28
28
C
96 110Right-handed alpha
Helix 29
29
C
113 126Right-handed alpha
Helix 30
30
C
134 145Right-handed alpha
Helix 31
31
C
148 157Right-handed alpha
Helix 32
32
C
161 178Right-handed alpha
Helix 33
33
C
202 211Right-handed alpha
Helix 34
34
D
16 30Right-handed alpha
Helix 35
35
D
43 52Right-handed alpha
Helix 36
36
D
55 58Right-handed 310
Helix 37
37
D
59 78Right-handed alpha
Helix 38
38
D
86 95Right-handed alpha
Helix 39
39
D
96 110Right-handed alpha
Helix 40
40
D
113 127Right-handed alpha
Helix 41
41
D
134 145Right-handed alpha
Helix 42
42
D
148 158Right-handed alpha
Helix 43
43
D
161 178Right-handed alpha
Helix 44
44
D
202 211Right-handed alpha
Helix 45
45
E
16 30Right-handed alpha
Helix 46
46
E
43 52Right-handed alpha
Helix 47
47
E
55 58Right-handed 310
Helix 48
48
E
59 78Right-handed alpha
Helix 49
49
E
87 95Right-handed alpha
Helix 50
50
E
96 110Right-handed alpha
Helix 51
51
E
113 127Right-handed alpha
Helix 52
52
E
134 145Right-handed alpha
Helix 53
53
E
148 159Right-handed alpha
Helix 54
54
E
161 178Right-handed alpha
Helix 55
55
E
202 211Right-handed alpha
Helix 56
56
F
16 30Right-handed alpha
Helix 57
57
F
43 52Right-handed alpha
Helix 58
58
F
55 58Right-handed 310
Helix 59
59
F
59 78Right-handed alpha
Helix 60
60
F
87 95Right-handed alpha
Helix 61
61
F
96 110Right-handed alpha
Helix 62
62
F
113 127Right-handed alpha
Helix 63
63
F
134 145Right-handed alpha
Helix 64
64
F
148 158Right-handed alpha
Helix 65
65
F
161 178Right-handed alpha
Helix 66
66
F
202 211Right-handed alpha
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There are 6 sheets in PDB entry 3RPN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 41first strand
Strand 2
A
6 12parallel
Strand 3
A
185 190anti-parallel
Strand 4
A
193 198anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 41first strand
Strand 2
B
6 12parallel
Strand 3
B
185 190anti-parallel
Strand 4
B
193 198anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 41first strand
Strand 2
C
6 12parallel
Strand 3
C
185 190anti-parallel
Strand 4
C
193 198anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 41first strand
Strand 2
D
6 12parallel
Strand 3
D
185 190anti-parallel
Strand 4
D
193 198anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
35 41first strand
Strand 2
E
6 12parallel
Strand 3
E
185 190anti-parallel
Strand 4
E
193 198anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
35 41first strand
Strand 2
F
6 12parallel
Strand 3
F
185 190anti-parallel
Strand 4
F
193 198anti-parallel
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