Analysis of interatomic Contacts of Structural Units in PDB entry:
3RPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RPT entry

There are 2 chains in PDB entry 3RPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 SER 2LEU 275
A
 ASP 1GLU 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 3RPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
10 19Right-handed alpha
Helix 2
2
X
24 32Right-handed alpha
Helix 3
3
X
48 64Right-handed alpha
Helix 4
4
X
83 96Right-handed alpha
Helix 5
5
X
120 136Right-handed alpha
Helix 6
6
X
152 163Right-handed alpha
Helix 7
7
X
164 169Right-handed alpha
Helix 8
8
X
181 197Right-handed alpha
Helix 9
9
X
263 273Right-handed alpha
Helix 10
10
A
10 19Right-handed alpha
Helix 11
11
A
24 32Right-handed alpha
Helix 12
12
A
48 64Right-handed alpha
Helix 13
13
A
83 95Right-handed alpha
Helix 14
14
A
121 136Right-handed alpha
Helix 15
15
A
152 163Right-handed alpha
Helix 16
16
A
164 169Right-handed alpha
Helix 17
17
A
181 197Right-handed alpha
Helix 18
18
A
263 273Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3RPT. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
39 41first strand
Strand 2
X
68 71parallel
Strand 3
X
102 106parallel
Strand 4
X
139 144parallel
Strand 5
X
171 174parallel
Strand 6
X
202 206parallel
Strand 7
X
240 244parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
68 71parallel
Strand 3
A
102 106parallel
Strand 4
A
139 144parallel
Strand 5
A
171 174parallel
Strand 6
A
202 206parallel
Strand 7
A
240 244parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il