Analysis of interatomic Contacts of Structural Units in PDB entry:
3RPU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RPU entry

There are 9 chains in PDB entry 3RPU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7ARG 327
G
 MET 10ILE 213
H
 HIS 9ARG 199
B
 THR 7ARG 327
D
 MET 10ILE 212
E
 HIS 9ARG 199
X
 VAL 8ARG 327
Y
 HIS 9ILE 213
Z
 MET 10ARG 197
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are107 helices in PDB entry 3RPU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 16Right-handed alpha
Helix 2
2
A
25 39Right-handed alpha
Helix 3
3
A
48 63Right-handed alpha
Helix 4
4
A
69 84Right-handed alpha
Helix 5
5
A
104 116Right-handed alpha
Helix 6
6
A
121 145Right-handed alpha
Helix 7
7
A
148 156Right-handed alpha
Helix 8
8
A
156 162Right-handed alpha
Helix 9
9
A
163 197Right-handed alpha
Helix 10
10
A
200 225Right-handed alpha
Helix 11
11
A
225 240Right-handed alpha
Helix 12
12
A
246 287Right-handed alpha
Helix 13
13
A
287 292Right-handed alpha
Helix 14
14
A
295 308Right-handed alpha
Helix 15
15
A
309 311Right-handed 310
Helix 16
16
G
11 20Right-handed alpha
Helix 17
17
G
22 32Right-handed alpha
Helix 18
18
G
40 60Right-handed alpha
Helix 19
19
G
89 105Right-handed alpha
Helix 20
20
G
106 112Right-handed alpha
Helix 21
21
G
117 128Right-handed alpha
Helix 22
22
G
129 138Right-handed alpha
Helix 23
23
G
145 165Right-handed alpha
Helix 24
24
G
182 187Right-handed 310
Helix 25
25
G
188 193Right-handed alpha
Helix 26
26
G
196 207Right-handed alpha
Helix 27
27
H
11 19Right-handed alpha
Helix 28
28
H
21 32Right-handed alpha
Helix 29
29
H
40 58Right-handed alpha
Helix 30
30
H
59 61Right-handed 310
Helix 31
31
H
89 105Right-handed alpha
Helix 32
32
H
106 111Right-handed alpha
Helix 33
33
H
117 128Right-handed alpha
Helix 34
34
H
129 135Right-handed alpha
Helix 35
35
H
138 157Right-handed alpha
Helix 36
36
H
175 181Right-handed 310
Helix 37
37
H
189 197Right-handed alpha
Helix 38
38
B
9 16Right-handed alpha
Helix 39
39
B
25 40Right-handed alpha
Helix 40
40
B
48 63Right-handed alpha
Helix 41
41
B
71 84Right-handed alpha
Helix 42
42
B
104 116Right-handed alpha
Helix 43
43
B
121 145Right-handed alpha
Helix 44
44
B
148 154Right-handed alpha
Helix 45
45
B
156 162Right-handed alpha
Helix 46
46
B
163 197Right-handed alpha
Helix 47
47
B
200 239Right-handed alpha
Helix 48
48
B
249 289Right-handed alpha
Helix 49
49
B
295 308Right-handed alpha
Helix 50
50
B
309 311Right-handed 310
Helix 51
51
D
11 19Right-handed alpha
Helix 52
52
D
22 31Right-handed alpha
Helix 53
53
D
40 60Right-handed alpha
Helix 54
54
D
89 105Right-handed alpha
Helix 55
55
D
106 112Right-handed alpha
Helix 56
56
D
117 128Right-handed alpha
Helix 57
57
D
131 138Right-handed alpha
Helix 58
58
D
143 164Right-handed alpha
Helix 59
59
D
180 186Right-handed 310
Helix 60
60
D
187 192Right-handed alpha
Helix 61
61
D
195 206Right-handed alpha
Helix 62
62
E
11 19Right-handed alpha
Helix 63
63
E
22 32Right-handed alpha
Helix 64
64
E
40 61Right-handed alpha
Helix 65
65
E
89 105Right-handed alpha
Helix 66
66
E
105 112Right-handed alpha
Helix 67
67
E
117 128Right-handed alpha
Helix 68
68
E
129 136Right-handed alpha
Helix 69
69
E
139 160Right-handed alpha
Helix 70
70
E
175 181Right-handed 310
Helix 71
71
E
189 199Right-handed alpha
Helix 72
72
X
8 18Right-handed alpha
Helix 73
73
X
25 39Right-handed alpha
Helix 74
74
X
48 63Right-handed alpha
Helix 75
75
X
69 84Right-handed alpha
Helix 76
76
X
104 116Right-handed alpha
Helix 77
77
X
121 145Right-handed alpha
Helix 78
78
X
148 155Right-handed alpha
Helix 79
79
X
156 162Right-handed alpha
Helix 80
80
X
163 196Right-handed alpha
Helix 81
81
X
199 243Right-handed alpha
Helix 82
82
X
247 288Right-handed alpha
Helix 83
83
X
295 307Right-handed alpha
Helix 84
84
X
308 311Right-handed 310
Helix 85
85
Y
11 20Right-handed alpha
Helix 86
86
Y
22 32Right-handed alpha
Helix 87
87
Y
40 50Right-handed alpha
Helix 88
88
Y
50 60Right-handed alpha
Helix 89
89
Y
89 105Right-handed alpha
Helix 90
90
Y
106 112Right-handed alpha
Helix 91
91
Y
117 128Right-handed alpha
Helix 92
92
Y
129 135Right-handed alpha
Helix 93
93
Y
145 165Right-handed alpha
Helix 94
94
Y
182 187Right-handed 310
Helix 95
95
Y
188 193Right-handed alpha
Helix 96
96
Y
198 207Right-handed alpha
Helix 97
97
Z
11 20Right-handed alpha
Helix 98
98
Z
22 33Right-handed alpha
Helix 99
99
Z
40 58Right-handed alpha
Helix 100
100
Z
59 61Right-handed 310
Helix 101
101
Z
89 105Right-handed alpha
Helix 102
102
Z
105 112Right-handed alpha
Helix 103
103
Z
117 128Right-handed alpha
Helix 104
104
Z
129 136Right-handed alpha
Helix 105
105
Z
138 158Right-handed alpha
Helix 106
106
Z
173 178Right-handed 310
Helix 107
107
Z
187 197Right-handed alpha
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There are 19 sheets in PDB entry 3RPU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
B
22 24anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
85 87first strand
Strand 2
A
313 318anti-parallel
Strand 3
G
210 212anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 325first strand
Strand 2
H
85 87parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
63 67first strand
Strand 2
G
73 77anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
114 116first strand
Strand 2
G
177 180anti-parallel
Strand 3
G
168 170anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
35 36first strand
Strand 2
H
73 77anti-parallel
Strand 3
H
63 67anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
114 116first strand
Strand 2
H
170 173anti-parallel
Strand 3
H
161 163anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
100 103anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
85 87first strand
Strand 2
B
313 318anti-parallel
Strand 3
D
209 211anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
63 67first strand
Strand 2
D
73 77anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
115 116first strand
Strand 2
D
176 177anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
35 36first strand
Strand 2
E
73 77anti-parallel
Strand 3
E
63 67anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
114 116first strand
Strand 2
E
170 173anti-parallel
Strand 3
E
163 165anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
87 90first strand
Strand 2
X
100 103anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
85 87first strand
Strand 2
X
314 318anti-parallel
Strand 3
Y
210 211anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
63 67first strand
Strand 2
Y
73 77anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
114 116first strand
Strand 2
Y
177 180anti-parallel
Strand 3
Y
168 170anti-parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
35 36first strand
Strand 2
Z
73 77anti-parallel
Strand 3
Z
63 67anti-parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
114 116first strand
Strand 2
Z
168 171anti-parallel
Strand 3
Z
161 163anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il