Analysis of interatomic Contacts of Structural Units in PDB entry:
3RPW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RPW entry

There is 1 chain in PDB entry 3RPW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 28LEU 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3RPW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 49Right-handed alpha
Helix 2
2
A
49 58Right-handed alpha
Helix 3
3
A
69 80Right-handed alpha
Helix 4
4
A
90 97Right-handed alpha
Helix 5
5
A
97 102Right-handed alpha
Helix 6
6
A
106 110Right-handed 310
Helix 7
7
A
111 120Right-handed alpha
Helix 8
8
A
121 124Right-handed 310
Helix 9
9
A
155 161Right-handed alpha
Helix 10
10
A
177 186Right-handed alpha
Helix 11
11
A
197 209Right-handed alpha
Helix 12
12
A
220 228Right-handed alpha
Helix 13
13
A
238 248Right-handed alpha
Helix 14
14
A
273 285Right-handed alpha
Helix 15
15
A
286 297Right-handed alpha
Helix 16
16
A
303 310Right-handed alpha
Helix 17
17
A
312 319Right-handed 310
Helix 18
18
A
322 329Right-handed alpha
Helix 19
19
A
333 339Right-handed alpha
Helix 20
20
A
347 360Right-handed alpha
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There are 3 sheets in PDB entry 3RPW. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
60 65parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
251 266anti-parallel
Strand 3
A
130 143anti-parallel
Strand 4
A
126 127anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
251 266anti-parallel
Strand 3
A
130 143anti-parallel
Strand 4
A
233 237anti-parallel
Strand 5
A
169 172parallel
Strand 6
A
212 216parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il