Analysis of interatomic Contacts of Structural Units in PDB entry:
3RTY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3RTY entry

There are 8 chains in PDB entry 3RTY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 236	LEU 574
B	LYS 236	GLU 566
C	LYS 236	GLU 566
D	LYS 236	LEU 574
E	LYS 236	LEU 574
F	LYS 236	GLU 566
G	LYS 236	LEU 574
H	LYS 236	GLU 566

There are 85 helices in PDB entry 3RTY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	257	263	Right-handed alpha
Helix 2	2	A	273	278	Right-handed 310
Helix 3	3	A	279	281	Right-handed 310
Helix 4	4	A	282	292	Right-handed alpha
Helix 5	5	A	407	413	Right-handed alpha
Helix 6	6	A	415	420	Right-handed alpha
Helix 7	7	A	423	428	Right-handed 310
Helix 8	8	A	429	431	Right-handed 310
Helix 9	9	A	432	447	Right-handed alpha
Helix 10	10	A	515	536	Right-handed alpha
Helix 11	11	A	553	574	Right-handed alpha
Helix 12	12	B	257	263	Right-handed alpha
Helix 13	13	B	273	278	Right-handed 310
Helix 14	14	B	279	281	Right-handed 310
Helix 15	15	B	282	294	Right-handed alpha
Helix 16	16	B	408	413	Right-handed alpha
Helix 17	17	B	415	420	Right-handed alpha
Helix 18	18	B	423	428	Right-handed 310
Helix 19	19	B	432	447	Right-handed alpha
Helix 20	20	B	519	534	Right-handed alpha
Helix 21	21	B	547	552	Right-handed alpha
Helix 22	22	B	552	563	Right-handed alpha
Helix 23	23	C	257	263	Right-handed alpha
Helix 24	24	C	273	278	Right-handed 310
Helix 25	25	C	279	292	Right-handed alpha
Helix 26	26	C	407	413	Right-handed alpha
Helix 27	27	C	415	420	Right-handed alpha
Helix 28	28	C	423	428	Right-handed 310
Helix 29	29	C	432	447	Right-handed alpha
Helix 30	30	C	519	534	Right-handed alpha
Helix 31	31	C	546	550	Right-handed 310
Helix 32	32	C	552	566	Right-handed alpha
Helix 33	33	D	257	262	Right-handed alpha
Helix 34	34	D	273	278	Right-handed 310
Helix 35	35	D	279	281	Right-handed 310
Helix 36	36	D	282	292	Right-handed alpha
Helix 37	37	D	407	413	Right-handed alpha
Helix 38	38	D	415	420	Right-handed alpha
Helix 39	39	D	423	428	Right-handed 310
Helix 40	40	D	429	431	Right-handed 310
Helix 41	41	D	432	447	Right-handed alpha
Helix 42	42	D	517	535	Right-handed alpha
Helix 43	43	D	553	574	Right-handed alpha
Helix 44	44	E	257	262	Right-handed alpha
Helix 45	45	E	273	278	Right-handed 310
Helix 46	46	E	279	281	Right-handed 310
Helix 47	47	E	282	292	Right-handed alpha
Helix 48	48	E	407	413	Right-handed alpha
Helix 49	49	E	415	420	Right-handed alpha
Helix 50	50	E	423	428	Right-handed 310
Helix 51	51	E	432	446	Right-handed alpha
Helix 52	52	E	447	449	Right-handed 310
Helix 53	53	E	515	535	Right-handed alpha
Helix 54	54	E	553	574	Right-handed alpha
Helix 55	55	F	257	263	Right-handed alpha
Helix 56	56	F	273	278	Right-handed 310
Helix 57	57	F	279	292	Right-handed alpha
Helix 58	58	F	407	413	Right-handed alpha
Helix 59	59	F	423	428	Right-handed 310
Helix 60	60	F	432	446	Right-handed alpha
Helix 61	61	F	519	535	Right-handed alpha
Helix 62	62	F	546	550	Right-handed 310
Helix 63	63	F	552	566	Right-handed alpha
Helix 64	64	G	257	262	Right-handed alpha
Helix 65	65	G	273	278	Right-handed 310
Helix 66	66	G	279	292	Right-handed alpha
Helix 67	67	G	407	413	Right-handed alpha
Helix 68	68	G	415	420	Right-handed alpha
Helix 69	69	G	423	428	Right-handed 310
Helix 70	70	G	429	431	Right-handed 310
Helix 71	71	G	432	447	Right-handed alpha
Helix 72	72	G	515	535	Right-handed alpha
Helix 73	73	G	553	574	Right-handed alpha
Helix 74	74	H	257	262	Right-handed alpha
Helix 75	75	H	273	278	Right-handed 310
Helix 76	76	H	279	281	Right-handed 310
Helix 77	77	H	282	292	Right-handed alpha
Helix 78	78	H	407	413	Right-handed alpha
Helix 79	79	H	415	420	Right-handed alpha
Helix 80	80	H	423	428	Right-handed 310
Helix 81	81	H	429	431	Right-handed 310
Helix 82	82	H	432	447	Right-handed alpha
Helix 83	83	H	519	536	Right-handed alpha
Helix 84	84	H	545	551	Right-handed alpha
Helix 85	85	H	552	563	Right-handed alpha

There are 23 sheets in PDB entry 3RTY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	254	first strand
Strand 2	A	240	245	anti-parallel
Strand 3	A	364	372	anti-parallel
Strand 4	A	335	346	anti-parallel
Strand 5	A	310	316	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	404	first strand
Strand 2	A	390	396	anti-parallel
Strand 3	A	486	497	anti-parallel
Strand 4	A	468	479	anti-parallel
Strand 5	A	459	462	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	254	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	364	372	anti-parallel
Strand 4	B	335	346	anti-parallel
Strand 5	B	312	316	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	404	first strand
Strand 2	B	390	396	anti-parallel
Strand 3	B	486	497	anti-parallel
Strand 4	B	468	479	anti-parallel
Strand 5	B	454	455	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	404	first strand
Strand 2	B	390	396	anti-parallel
Strand 3	B	486	497	anti-parallel
Strand 4	B	468	479	anti-parallel
Strand 5	B	459	462	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	254	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	364	372	anti-parallel
Strand 4	C	335	339	anti-parallel
Strand 5	C	312	316	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	254	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	364	372	anti-parallel
Strand 4	C	342	346	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	404	first strand
Strand 2	C	390	396	anti-parallel
Strand 3	C	486	497	anti-parallel
Strand 4	C	468	479	anti-parallel
Strand 5	C	454	455	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	404	first strand
Strand 2	C	390	396	anti-parallel
Strand 3	C	486	497	anti-parallel
Strand 4	C	468	479	anti-parallel
Strand 5	C	459	462	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	254	first strand
Strand 2	D	240	245	anti-parallel
Strand 3	D	364	372	anti-parallel
Strand 4	D	335	346	anti-parallel
Strand 5	D	310	316	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	401	404	first strand
Strand 2	D	390	396	anti-parallel
Strand 3	D	486	497	anti-parallel
Strand 4	D	474	479	anti-parallel
Strand 5	D	454	455	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	401	404	first strand
Strand 2	D	390	396	anti-parallel
Strand 3	D	486	497	anti-parallel
Strand 4	D	468	471	anti-parallel
Strand 5	D	459	462	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	251	254	first strand
Strand 2	E	240	245	anti-parallel
Strand 3	E	364	372	anti-parallel
Strand 4	E	335	346	anti-parallel
Strand 5	E	310	316	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	401	404	first strand
Strand 2	E	390	396	anti-parallel
Strand 3	E	486	497	anti-parallel
Strand 4	E	474	479	anti-parallel
Strand 5	E	454	455	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	401	404	first strand
Strand 2	E	390	396	anti-parallel
Strand 3	E	486	497	anti-parallel
Strand 4	E	468	471	anti-parallel
Strand 5	E	459	462	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	251	254	first strand
Strand 2	F	240	245	anti-parallel
Strand 3	F	364	372	anti-parallel
Strand 4	F	335	341	anti-parallel
Strand 5	F	310	316	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	251	254	first strand
Strand 2	F	240	245	anti-parallel
Strand 3	F	364	372	anti-parallel
Strand 4	F	344	346	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	401	404	first strand
Strand 2	F	390	396	anti-parallel
Strand 3	F	486	497	anti-parallel
Strand 4	F	468	479	anti-parallel
Strand 5	F	454	455	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	401	404	first strand
Strand 2	F	390	396	anti-parallel
Strand 3	F	486	497	anti-parallel
Strand 4	F	468	479	anti-parallel
Strand 5	F	459	462	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	251	254	first strand
Strand 2	G	240	245	anti-parallel
Strand 3	G	364	372	anti-parallel
Strand 4	G	335	346	anti-parallel
Strand 5	G	310	316	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	401	404	first strand
Strand 2	G	390	396	anti-parallel
Strand 3	G	486	497	anti-parallel
Strand 4	G	468	479	anti-parallel
Strand 5	G	459	462	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	251	254	first strand
Strand 2	H	240	245	anti-parallel
Strand 3	H	364	372	anti-parallel
Strand 4	H	335	346	anti-parallel
Strand 5	H	310	316	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	401	404	first strand
Strand 2	H	390	396	anti-parallel
Strand 3	H	486	497	anti-parallel
Strand 4	H	468	479	anti-parallel
Strand 5	H	459	462	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3RTY

Analysis of interatomic Contacts of Structural Units in PDB entry:
3RTY