Analysis of interatomic Contacts of Structural Units in PDB entry:
3RUB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RUB entry

There are 2 chains in PDB entry 3RUB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 LEU 22PHE 467
S
 MET 1TYR 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 3RUB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
N1
L
50 59Right-handed alpha
Helix 2
N2
L
113 121Right-handed alpha
Helix 3
N3
L
142 145Right-handed alpha
Helix 4
N4
L
155 162Right-handed alpha
Helix 5
B1
L
182 194Right-handed alpha
Helix 6
B2
L
214 232Right-handed alpha
Helix 7
B3
L
247 260Right-handed alpha
Helix 8
B4A
L
269 272Right-handed alpha
Helix 9
B4B
L
274 287Right-handed alpha
Helix 10
B5A
L
298 302Right-handed alpha
Helix 11
B5B
L
311 321Right-handed alpha
Helix 12
B6
L
336 350Right-handed alpha
Helix 13
B7
L
387 394Right-handed alpha
Helix 14
B8
L
413 432Right-handed alpha
Helix 15
C1
L
437 451Right-handed alpha
Helix 16
C2
L
453 466Right-handed alpha
Helix 17
S1
S
23 35Right-handed alpha
Helix 18
S2
S
80 93Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3RUB. Click on sheet of interest to get list of strands forming it: N, S,

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
36 44first strand
Strand 2
L
83 89parallel
Strand 3
L
97 103anti-parallel
Strand 4
L
130 139parallel
Back to list of sheets
Back to top of page

There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
39 45first strand
Strand 2
S
68 70anti-parallel
Strand 3
S
98 105parallel
Strand 4
S
110 118anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il