Analysis of interatomic Contacts of Structural Units in PDB entry:
3RVD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3RVD entry

There are 16 chains in PDB entry 3RVD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 0	LYS 333
B	LYS 0	LYS 333
C	LYS 0	LYS 333
D	LYS 0	LYS 333
E	ALA -1	TRP 332
F	LYS 0	LYS 333
G	ALA -1	LYS 333
H	LYS 0	TRP 332
I	SER 57	ASN 78
J	ASP 58	ASN 78
K	ASP 58	ASN 78
L	ASP 55	CYS 73
M	SER 57	ASN 78
N	ASP 58	TYR 76
O	ALA -1	LYS 333
Q	LYS 0	LYS 333

There are127 helices in PDB entry 3RVD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	19	Right-handed alpha
Helix 2	2	A	36	46	Right-handed alpha
Helix 3	3	A	78	86	Right-handed 310
Helix 4	4	A	105	110	Right-handed alpha
Helix 5	5	A	133	137	Right-handed 310
Helix 6	6	A	148	165	Right-handed alpha
Helix 7	7	A	198	202	Right-handed 310
Helix 8	8	A	209	218	Right-handed alpha
Helix 9	9	A	219	222	Right-handed 310
Helix 10	10	A	251	265	Right-handed alpha
Helix 11	11	A	279	284	Right-handed 310
Helix 12	12	A	295	297	Right-handed 310
Helix 13	13	A	314	331	Right-handed alpha
Helix 14	14	B	9	20	Right-handed alpha
Helix 15	15	B	34	45	Right-handed alpha
Helix 16	16	B	78	82	Right-handed 310
Helix 17	17	B	83	88	Right-handed alpha
Helix 18	18	B	101	111	Right-handed alpha
Helix 19	19	B	148	166	Right-handed alpha
Helix 20	20	B	213	218	Right-handed alpha
Helix 21	21	B	251	265	Right-handed alpha
Helix 22	22	B	279	284	Right-handed 310
Helix 23	23	B	295	297	Right-handed 310
Helix 24	24	B	314	331	Right-handed alpha
Helix 25	25	C	9	19	Right-handed alpha
Helix 26	26	C	36	46	Right-handed alpha
Helix 27	27	C	101	110	Right-handed alpha
Helix 28	28	C	148	166	Right-handed alpha
Helix 29	29	C	209	218	Right-handed alpha
Helix 30	30	C	219	222	Right-handed 310
Helix 31	31	C	251	266	Right-handed alpha
Helix 32	32	C	279	284	Right-handed 310
Helix 33	33	C	314	330	Right-handed alpha
Helix 34	34	D	9	20	Right-handed alpha
Helix 35	35	D	37	45	Right-handed alpha
Helix 36	36	D	65	69	Right-handed 310
Helix 37	37	D	78	82	Right-handed 310
Helix 38	38	D	101	111	Right-handed alpha
Helix 39	39	D	157	163	Right-handed alpha
Helix 40	40	D	198	202	Right-handed 310
Helix 41	41	D	213	218	Right-handed alpha
Helix 42	42	D	219	222	Right-handed 310
Helix 43	43	D	251	263	Right-handed alpha
Helix 44	44	D	279	284	Right-handed 310
Helix 45	45	D	295	297	Right-handed 310
Helix 46	46	D	314	324	Right-handed alpha
Helix 47	47	D	325	330	Right-handed alpha
Helix 48	48	E	9	20	Right-handed alpha
Helix 49	49	E	36	43	Right-handed alpha
Helix 50	50	E	78	82	Right-handed 310
Helix 51	51	E	83	88	Right-handed alpha
Helix 52	52	E	101	106	Right-handed alpha
Helix 53	53	E	133	137	Right-handed 310
Helix 54	54	E	148	166	Right-handed alpha
Helix 55	55	E	198	202	Right-handed 310
Helix 56	56	E	212	216	Right-handed 310
Helix 57	57	E	251	265	Right-handed alpha
Helix 58	58	E	279	283	Right-handed 310
Helix 59	59	E	295	297	Right-handed 310
Helix 60	60	E	315	331	Right-handed alpha
Helix 61	61	F	9	20	Right-handed alpha
Helix 62	62	F	36	46	Right-handed alpha
Helix 63	63	F	78	82	Right-handed 310
Helix 64	64	F	83	88	Right-handed alpha
Helix 65	65	F	101	110	Right-handed alpha
Helix 66	66	F	132	137	Right-handed 310
Helix 67	67	F	150	164	Right-handed alpha
Helix 68	68	F	209	214	Right-handed alpha
Helix 69	69	F	215	217	Right-handed 310
Helix 70	70	F	251	263	Right-handed alpha
Helix 71	71	F	279	284	Right-handed 310
Helix 72	72	F	295	297	Right-handed 310
Helix 73	73	F	314	330	Right-handed alpha
Helix 74	74	G	9	20	Right-handed alpha
Helix 75	75	G	36	45	Right-handed alpha
Helix 76	76	G	83	88	Right-handed alpha
Helix 77	77	G	101	112	Right-handed alpha
Helix 78	78	G	132	137	Right-handed 310
Helix 79	79	G	150	166	Right-handed alpha
Helix 80	80	G	209	218	Right-handed alpha
Helix 81	81	G	251	264	Right-handed alpha
Helix 82	82	G	279	284	Right-handed 310
Helix 83	83	G	294	297	Right-handed 310
Helix 84	84	G	314	331	Right-handed alpha
Helix 85	85	H	9	20	Right-handed alpha
Helix 86	86	H	36	45	Right-handed alpha
Helix 87	87	H	106	111	Right-handed alpha
Helix 88	88	H	148	164	Right-handed alpha
Helix 89	89	H	193	197	Right-handed 310
Helix 90	90	H	198	202	Right-handed 310
Helix 91	91	H	209	218	Right-handed alpha
Helix 92	92	H	219	222	Right-handed 310
Helix 93	93	H	251	265	Right-handed alpha
Helix 94	94	H	280	284	Right-handed 310
Helix 95	95	H	295	297	Right-handed 310
Helix 96	96	H	314	328	Right-handed alpha
Helix 97	97	I	58	67	Right-handed alpha
Helix 98	98	J	58	67	Right-handed alpha
Helix 99	99	K	58	67	Right-handed alpha
Helix 100	100	L	59	66	Right-handed alpha
Helix 101	101	M	58	66	Right-handed alpha
Helix 102	102	N	58	64	Right-handed alpha
Helix 103	103	O	9	19	Right-handed alpha
Helix 104	104	O	36	46	Right-handed alpha
Helix 105	105	O	78	82	Right-handed 310
Helix 106	106	O	101	111	Right-handed alpha
Helix 107	107	O	133	137	Right-handed 310
Helix 108	108	O	148	166	Right-handed alpha
Helix 109	109	O	209	218	Right-handed alpha
Helix 110	110	O	219	222	Right-handed 310
Helix 111	111	O	251	265	Right-handed alpha
Helix 112	112	O	279	284	Right-handed 310
Helix 113	113	O	295	297	Right-handed 310
Helix 114	114	O	314	332	Right-handed alpha
Helix 115	115	Q	9	19	Right-handed alpha
Helix 116	116	Q	36	46	Right-handed alpha
Helix 117	117	Q	78	82	Right-handed 310
Helix 118	118	Q	83	88	Right-handed alpha
Helix 119	119	Q	101	106	Right-handed alpha
Helix 120	120	Q	106	111	Right-handed alpha
Helix 121	121	Q	148	165	Right-handed alpha
Helix 122	122	Q	209	218	Right-handed alpha
Helix 123	123	Q	219	222	Right-handed 310
Helix 124	124	Q	251	263	Right-handed alpha
Helix 125	125	Q	279	284	Right-handed 310
Helix 126	126	Q	295	297	Right-handed 310
Helix 127	127	Q	314	331	Right-handed alpha

There are 36 sheets in PDB entry 3RVD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	63	66	anti-parallel
Strand 3	A	70	73	anti-parallel
Strand 4	A	26	31	parallel
Strand 5	A	2	6	parallel
Strand 6	A	91	94	parallel
Strand 7	A	115	118	parallel
Strand 8	A	143	145	parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	207	first strand
Strand 2	A	225	232	anti-parallel
Strand 3	A	167	177	parallel
Strand 4	A	238	246	anti-parallel
Strand 5	A	304	311	anti-parallel
Strand 6	A	290	293	anti-parallel
Strand 7	A	271	274	parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	207	first strand
Strand 2	A	225	232	anti-parallel
Strand 3	A	167	177	parallel
Strand 4	A	238	246	anti-parallel
Strand 5	A	304	311	anti-parallel
Strand 6	A	298	300	anti-parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	60	first strand
Strand 2	B	63	66	anti-parallel
Strand 3	B	69	74	anti-parallel
Strand 4	B	25	31	parallel
Strand 5	B	1	6	parallel
Strand 6	B	91	94	parallel
Strand 7	B	115	118	parallel
Strand 8	B	143	145	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	51	52	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	207	first strand
Strand 2	B	225	232	anti-parallel
Strand 3	B	167	177	parallel
Strand 4	B	238	246	anti-parallel
Strand 5	B	304	311	anti-parallel
Strand 6	B	290	293	anti-parallel
Strand 7	B	271	274	parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	207	first strand
Strand 2	B	225	232	anti-parallel
Strand 3	B	167	177	parallel
Strand 4	B	238	246	anti-parallel
Strand 5	B	304	311	anti-parallel
Strand 6	B	298	300	anti-parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	63	66	anti-parallel
Strand 3	C	70	74	anti-parallel
Strand 4	C	25	31	parallel
Strand 5	C	1	6	parallel
Strand 6	C	91	94	parallel
Strand 7	C	116	118	parallel
Strand 8	C	143	145	parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	207	first strand
Strand 2	C	227	232	anti-parallel
Strand 3	C	167	177	parallel
Strand 4	C	238	246	anti-parallel
Strand 5	C	304	311	anti-parallel
Strand 6	C	290	293	anti-parallel
Strand 7	C	271	274	parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	207	first strand
Strand 2	C	227	232	anti-parallel
Strand 3	C	167	177	parallel
Strand 4	C	238	246	anti-parallel
Strand 5	C	304	311	anti-parallel
Strand 6	C	298	300	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	74	first strand
Strand 2	D	25	31	parallel
Strand 3	D	1	6	parallel
Strand 4	D	89	94	parallel
Strand 5	D	113	118	parallel
Strand 6	D	143	144	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	47	first strand
Strand 2	D	51	52	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	206	first strand
Strand 2	D	228	232	anti-parallel
Strand 3	D	171	177	parallel
Strand 4	D	238	244	anti-parallel
Strand 5	D	305	311	anti-parallel
Strand 6	D	290	293	anti-parallel
Strand 7	D	271	274	parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	206	first strand
Strand 2	D	228	232	anti-parallel
Strand 3	D	171	177	parallel
Strand 4	D	238	244	anti-parallel
Strand 5	D	305	311	anti-parallel
Strand 6	D	298	299	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	27	first strand
Strand 2	E	1	6	parallel
Strand 3	E	91	94	parallel
Strand 4	E	115	118	parallel
Strand 5	E	143	145	parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	71	74	parallel
Strand 3	E	63	64	anti-parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	204	206	first strand
Strand 2	E	227	231	anti-parallel
Strand 3	E	167	176	parallel
Strand 4	E	238	246	anti-parallel
Strand 5	E	304	311	anti-parallel
Strand 6	E	291	293	anti-parallel
Strand 7	E	272	274	parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	204	206	first strand
Strand 2	E	227	231	anti-parallel
Strand 3	E	167	176	parallel
Strand 4	E	238	246	anti-parallel
Strand 5	E	304	311	anti-parallel
Strand 6	E	298	300	anti-parallel

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There are 8 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	59	first strand
Strand 2	F	63	65	anti-parallel
Strand 3	F	70	74	anti-parallel
Strand 4	F	26	31	parallel
Strand 5	F	2	6	parallel
Strand 6	F	91	94	parallel
Strand 7	F	115	118	parallel
Strand 8	F	143	145	parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	167	170	first strand
Strand 2	F	238	246	anti-parallel
Strand 3	F	173	175	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	167	170	first strand
Strand 2	F	238	246	anti-parallel
Strand 3	F	304	311	anti-parallel
Strand 4	F	290	293	anti-parallel
Strand 5	F	271	274	parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	204	207	first strand
Strand 2	F	228	231	anti-parallel

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There are 8 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	58	first strand
Strand 2	G	63	66	anti-parallel
Strand 3	G	69	74	anti-parallel
Strand 4	G	25	31	parallel
Strand 5	G	1	6	parallel
Strand 6	G	91	94	parallel
Strand 7	G	115	118	parallel
Strand 8	G	143	145	parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	47	first strand
Strand 2	G	51	52	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	167	171	first strand
Strand 2	G	242	246	anti-parallel
Strand 3	G	304	307	anti-parallel
Strand 4	G	298	300	anti-parallel

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There are 7 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	204	206	first strand
Strand 2	G	228	232	anti-parallel
Strand 3	G	173	177	parallel
Strand 4	G	238	240	anti-parallel
Strand 5	G	309	311	anti-parallel
Strand 6	G	290	292	anti-parallel
Strand 7	G	271	273	parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	26	31	first strand
Strand 2	H	2	6	parallel
Strand 3	H	91	94	parallel
Strand 4	H	115	118	parallel
Strand 5	H	143	144	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	66	first strand
Strand 2	H	69	72	anti-parallel

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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	227	232	first strand
Strand 2	H	167	177	parallel
Strand 3	H	238	246	anti-parallel
Strand 4	H	304	311	anti-parallel
Strand 5	H	291	293	anti-parallel
Strand 6	H	273	274	parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	227	232	first strand
Strand 2	H	167	177	parallel
Strand 3	H	238	246	anti-parallel
Strand 4	H	304	311	anti-parallel
Strand 5	H	298	300	anti-parallel

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There are 8 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	57	60	first strand
Strand 2	O	63	66	anti-parallel
Strand 3	O	69	74	anti-parallel
Strand 4	O	25	31	parallel
Strand 5	O	1	6	parallel
Strand 6	O	91	94	parallel
Strand 7	O	115	118	parallel
Strand 8	O	143	145	parallel

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There are 7 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	204	206	first strand
Strand 2	O	227	232	anti-parallel
Strand 3	O	167	177	parallel
Strand 4	O	238	246	anti-parallel
Strand 5	O	304	311	anti-parallel
Strand 6	O	290	293	anti-parallel
Strand 7	O	271	274	parallel

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There are 6 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	204	206	first strand
Strand 2	O	227	232	anti-parallel
Strand 3	O	167	177	parallel
Strand 4	O	238	246	anti-parallel
Strand 5	O	304	311	anti-parallel
Strand 6	O	298	300	anti-parallel

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There are 8 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	57	59	first strand
Strand 2	Q	63	66	anti-parallel
Strand 3	Q	69	74	anti-parallel
Strand 4	Q	26	31	parallel
Strand 5	Q	2	6	parallel
Strand 6	Q	91	94	parallel
Strand 7	Q	115	118	parallel
Strand 8	Q	143	145	parallel

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There are 7 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	204	207	first strand
Strand 2	Q	227	232	anti-parallel
Strand 3	Q	167	177	parallel
Strand 4	Q	238	246	anti-parallel
Strand 5	Q	304	311	anti-parallel
Strand 6	Q	290	293	anti-parallel
Strand 7	Q	271	274	parallel

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There are 6 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	204	207	first strand
Strand 2	Q	227	232	anti-parallel
Strand 3	Q	167	177	parallel
Strand 4	Q	238	246	anti-parallel
Strand 5	Q	304	311	anti-parallel
Strand 6	Q	298	300	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3RVD

Analysis of interatomic Contacts of Structural Units in PDB entry:
3RVD