Analysis of interatomic Contacts of Structural Units in PDB entry:
3RY3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RY3 entry

There are 2 chains in PDB entry 3RY3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 30LYS 521
B
 THR 30LYS 521
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 3RY3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 48Right-handed 310
Helix 2
2
A
52 57Right-handed 310
Helix 3
3
A
104 116Right-handed alpha
Helix 4
4
A
148 154Right-handed alpha
Helix 5
5
A
214 224Right-handed alpha
Helix 6
6
A
281 292Right-handed alpha
Helix 7
7
A
293 302Right-handed alpha
Helix 8
8
A
329 340Right-handed alpha
Helix 9
9
A
367 382Right-handed alpha
Helix 10
10
A
383 385Right-handed 310
Helix 11
11
A
394 402Right-handed alpha
Helix 12
12
A
416 424Right-handed alpha
Helix 13
13
A
425 428Right-handed 310
Helix 14
14
A
440 453Right-handed alpha
Helix 15
15
A
455 468Right-handed alpha
Helix 16
16
A
511 520Right-handed 310
Helix 17
17
B
44 48Right-handed 310
Helix 18
18
B
53 58Right-handed alpha
Helix 19
19
B
104 116Right-handed alpha
Helix 20
20
B
148 154Right-handed alpha
Helix 21
21
B
214 224Right-handed alpha
Helix 22
22
B
281 292Right-handed alpha
Helix 23
23
B
293 302Right-handed alpha
Helix 24
24
B
329 340Right-handed alpha
Helix 25
25
B
367 382Right-handed alpha
Helix 26
26
B
383 385Right-handed 310
Helix 27
27
B
394 402Right-handed alpha
Helix 28
28
B
416 424Right-handed alpha
Helix 29
29
B
425 428Right-handed 310
Helix 30
30
B
440 453Right-handed alpha
Helix 31
31
B
455 465Right-handed alpha
Helix 32
32
B
511 520Right-handed 310
Back to top of page

There are 13 sheets in PDB entry 3RY3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 185first strand
Strand 2
A
189 194anti-parallel
Strand 3
A
207 211anti-parallel
Strand 4
A
31 34parallel
Strand 5
A
229 232parallel
Strand 6
A
482 495anti-parallel
Strand 7
A
306 308anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 185first strand
Strand 2
A
189 194anti-parallel
Strand 3
A
207 211anti-parallel
Strand 4
A
31 34parallel
Strand 5
A
229 232parallel
Strand 6
A
482 495anti-parallel
Strand 7
A
244 258anti-parallel
Strand 8
A
407 409anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
70 72anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 80first strand
Strand 2
A
86 91anti-parallel
Strand 3
A
137 142anti-parallel
Strand 4
A
127 134anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
350 352anti-parallel
Strand 3
A
355 356anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 364first strand
Strand 2
A
387 393parallel
Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 185first strand
Strand 2
B
189 194anti-parallel
Strand 3
B
207 211anti-parallel
Strand 4
B
31 34parallel
Strand 5
B
229 232parallel
Strand 6
B
490 495anti-parallel
Strand 7
B
244 249anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 64first strand
Strand 2
B
70 71anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 80first strand
Strand 2
B
86 91anti-parallel
Strand 3
B
137 142anti-parallel
Strand 4
B
127 134anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 308first strand
Strand 2
B
482 488anti-parallel
Strand 3
B
254 258anti-parallel
Strand 4
B
407 409anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 267first strand
Strand 2
B
273 274anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 344first strand
Strand 2
B
350 352anti-parallel
Strand 3
B
355 356anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
358 364first strand
Strand 2
B
387 393parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il