Analysis of interatomic Contacts of Structural Units in PDB entry:
3RYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RYD entry

There are 2 chains in PDB entry 3RYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3ARG 265
C
 ASP 3ARG 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3RYD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 20Right-handed alpha
Helix 2
2
A
23 30Right-handed alpha
Helix 3
3
A
44 62Right-handed alpha
Helix 4
4
A
92 100Right-handed alpha
Helix 5
5
A
151 154Right-handed 310
Helix 6
6
A
165 176Right-handed alpha
Helix 7
7
A
184 194Right-handed alpha
Helix 8
8
A
206 211Right-handed alpha
Helix 9
9
A
212 220Right-handed alpha
Helix 10
10
A
247 257Right-handed alpha
Helix 11
11
C
5 18Right-handed alpha
Helix 12
12
C
23 28Right-handed alpha
Helix 13
13
C
48 62Right-handed alpha
Helix 14
14
C
92 100Right-handed alpha
Helix 15
15
C
123 126Right-handed 310
Helix 16
16
C
151 154Right-handed 310
Helix 17
17
C
165 176Right-handed alpha
Helix 18
18
C
184 194Right-handed alpha
Helix 19
19
C
206 211Right-handed alpha
Helix 20
20
C
212 220Right-handed alpha
Helix 21
21
C
247 257Right-handed alpha
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There are 4 sheets in PDB entry 3RYD. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
83 91parallel
Strand 3
A
104 111anti-parallel
Strand 4
A
114 122anti-parallel
Strand 5
A
127 132anti-parallel
Strand 6
A
136 139anti-parallel
Strand 7
A
142 144anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
156 159parallel
Strand 3
A
199 202parallel
Strand 4
A
240 243anti-parallel
Strand 5
A
223 226anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 68first strand
Strand 2
C
83 91parallel
Strand 3
C
104 111anti-parallel
Strand 4
C
114 122anti-parallel
Strand 5
C
127 132anti-parallel
Strand 6
C
136 139anti-parallel
Strand 7
C
142 144anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
178 179first strand
Strand 2
C
156 159parallel
Strand 3
C
199 202parallel
Strand 4
C
240 243anti-parallel
Strand 5
C
223 226anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il