Analysis of interatomic Contacts of Structural Units in PDB entry:
3RYH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RYH entry

There are 3 chains in PDB entry 3RYH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 441
B
 MET 1GLU 442
C
 MET 1GLY 410
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 83 helices in PDB entry 3RYH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 29Right-handed alpha
Helix 2
2
A
47 51Right-handed 310
Helix 3
3
A
72 79Right-handed alpha
Helix 4
4
A
88 90Right-handed 310
Helix 5
5
A
102 108Right-handed alpha
Helix 6
6
A
110 126Right-handed alpha
Helix 7
7
A
143 161Right-handed alpha
Helix 8
8
A
182 195Right-handed alpha
Helix 9
9
A
196 198Right-handed 310
Helix 10
10
A
206 217Right-handed alpha
Helix 11
11
A
223 244Right-handed alpha
Helix 12
12
A
251 260Right-handed alpha
Helix 13
13
A
287 294Right-handed alpha
Helix 14
14
A
295 301Right-handed 310
Helix 15
15
A
306 310Right-handed 310
Helix 16
16
A
324 339Right-handed alpha
Helix 17
17
A
384 400Right-handed alpha
Helix 18
18
A
404 410Right-handed alpha
Helix 19
19
A
414 436Right-handed alpha
Helix 20
20
B
10 28Right-handed alpha
Helix 21
21
B
40 48Right-handed alpha
Helix 22
22
B
49 51Right-handed 310
Helix 23
23
B
72 80Right-handed alpha
Helix 24
24
B
83 87Right-handed 310
Helix 25
25
B
102 109Right-handed alpha
Helix 26
26
B
110 128Right-handed alpha
Helix 27
27
B
147 161Right-handed alpha
Helix 28
28
B
174 178Right-handed 310
Helix 29
29
B
182 198Right-handed alpha
Helix 30
30
B
206 215Right-handed alpha
Helix 31
31
B
223 239Right-handed alpha
Helix 32
32
B
239 244Right-handed alpha
Helix 33
33
B
251 260Right-handed alpha
Helix 34
34
B
287 295Right-handed alpha
Helix 35
35
B
296 301Right-handed 310
Helix 36
36
B
306 310Right-handed 310
Helix 37
37
B
324 339Right-handed alpha
Helix 38
38
B
340 343Right-handed 310
Helix 39
39
B
384 400Right-handed alpha
Helix 40
40
B
404 411Right-handed alpha
Helix 41
41
B
414 438Right-handed alpha
Helix 42
42
C
10 29Right-handed alpha
Helix 43
43
C
47 51Right-handed 310
Helix 44
44
C
72 79Right-handed alpha
Helix 45
45
C
88 90Right-handed 310
Helix 46
46
C
102 108Right-handed alpha
Helix 47
47
C
110 113Right-handed 310
Helix 48
48
C
114 128Right-handed alpha
Helix 49
49
C
143 162Right-handed alpha
Helix 50
50
C
182 195Right-handed alpha
Helix 51
51
C
196 198Right-handed 310
Helix 52
52
C
206 217Right-handed alpha
Helix 53
53
C
223 244Right-handed alpha
Helix 54
54
C
251 260Right-handed alpha
Helix 55
55
C
287 294Right-handed alpha
Helix 56
56
C
295 301Right-handed 310
Helix 57
57
C
324 337Right-handed alpha
Helix 58
58
C
384 400Right-handed alpha
Helix 59
59
C
404 410Right-handed alpha
Helix 60
60
C
415 437Right-handed alpha
Helix 61
61
D
10 28Right-handed alpha
Helix 62
62
D
40 48Right-handed alpha
Helix 63
63
D
49 51Right-handed 310
Helix 64
64
D
72 80Right-handed alpha
Helix 65
65
D
83 87Right-handed 310
Helix 66
66
D
88 90Right-handed 310
Helix 67
67
D
102 109Right-handed alpha
Helix 68
68
D
109 128Right-handed alpha
Helix 69
69
D
144 161Right-handed alpha
Helix 70
70
D
182 198Right-handed alpha
Helix 71
71
D
206 215Right-handed alpha
Helix 72
72
D
223 239Right-handed alpha
Helix 73
73
D
239 244Right-handed alpha
Helix 74
74
D
251 260Right-handed alpha
Helix 75
75
D
287 295Right-handed alpha
Helix 76
76
D
296 301Right-handed 310
Helix 77
77
D
306 310Right-handed 310
Helix 78
78
D
324 339Right-handed alpha
Helix 79
79
D
340 343Right-handed 310
Helix 80
80
D
384 400Right-handed alpha
Helix 81
81
D
404 410Right-handed alpha
Helix 82
82
D
414 438Right-handed alpha
Helix 83
83
E
46 139Right-handed alpha
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There are 10 sheets in PDB entry 3RYH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
4 9parallel
Strand 4
A
134 140parallel
Strand 5
A
165 172parallel
Strand 6
A
200 205parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
349 356parallel
Strand 5
E
17 25anti-parallel
Strand 6
E
7 14anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
3 9parallel
Strand 4
B
132 140parallel
Strand 5
B
165 172parallel
Strand 6
B
200 205parallel
Strand 7
B
267 273parallel
Strand 8
B
374 381anti-parallel
Strand 9
B
312 320anti-parallel
Strand 10
B
351 356parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
61 63anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 94first strand
Strand 2
C
65 69parallel
Strand 3
C
4 9parallel
Strand 4
C
134 140parallel
Strand 5
C
165 172parallel
Strand 6
C
200 205parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 55first strand
Strand 2
C
61 63anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
269 273first strand
Strand 2
C
373 381anti-parallel
Strand 3
C
312 321anti-parallel
Strand 4
C
351 356parallel
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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 94first strand
Strand 2
D
65 69parallel
Strand 3
D
4 9parallel
Strand 4
D
134 140parallel
Strand 5
D
165 172parallel
Strand 6
D
200 205parallel
Strand 7
D
267 273parallel
Strand 8
D
373 381anti-parallel
Strand 9
D
312 321anti-parallel
Strand 10
D
351 356parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 54first strand
Strand 2
D
62 63anti-parallel
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