Analysis of interatomic Contacts of Structural Units in PDB entry:
3S06


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S06 entry

There are 2 chains in PDB entry 3S06 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 91HIS 252
B
 GLY 105PRO 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3S06. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 99Right-handed alpha
Helix 2
2
A
120 124Right-handed 310
Helix 3
3
A
134 136Right-handed 310
Helix 4
4
A
137 148Right-handed alpha
Helix 5
5
A
149 151Right-handed 310
Helix 6
6
A
175 194Right-handed alpha
Helix 7
7
A
197 199Right-handed 310
Helix 8
8
A
217 225Right-handed alpha
Helix 9
9
A
236 250Right-handed alpha
Helix 10
10
B
121 125Right-handed alpha
Helix 11
11
B
134 136Right-handed 310
Helix 12
12
B
137 151Right-handed alpha
Helix 13
13
B
175 194Right-handed alpha
Helix 14
14
B
197 199Right-handed 310
Helix 15
15
B
217 225Right-handed alpha
Helix 16
16
B
236 250Right-handed alpha
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There are 2 sheets in PDB entry 3S06. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 111first strand
Strand 2
A
114 119anti-parallel
Strand 3
A
227 232anti-parallel
Strand 4
A
156 164anti-parallel
Strand 5
A
201 210parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 111first strand
Strand 2
B
114 120anti-parallel
Strand 3
B
226 232anti-parallel
Strand 4
B
156 162anti-parallel
Strand 5
B
201 205parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il