Analysis of interatomic Contacts of Structural Units in PDB entry:
3S11


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S11 entry

There are 6 chains in PDB entry 3S11 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 9THR 323
B
 GLY 1ARG 170
C
 GLY 10THR 323
D
 GLY 1GLU 172
E
 PRO 9THR 323
F
 GLY 1ILE 173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3S11. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 72Right-handed alpha
Helix 2
2
A
73 80Right-handed 310
Helix 3
3
A
104 113Right-handed alpha
Helix 4
4
A
125 127Right-handed 310
Helix 5
5
A
187 196Right-handed alpha
Helix 6
6
B
37 59Right-handed alpha
Helix 7
7
B
74 127Right-handed alpha
Helix 8
8
B
145 154Right-handed alpha
Helix 9
9
B
162 170Right-handed alpha
Helix 10
10
C
65 72Right-handed alpha
Helix 11
11
C
76 80Right-handed 310
Helix 12
12
C
104 113Right-handed alpha
Helix 13
13
C
125 127Right-handed 310
Helix 14
14
C
187 196Right-handed alpha
Helix 15
15
D
37 59Right-handed alpha
Helix 16
16
D
74 127Right-handed alpha
Helix 17
17
D
145 154Right-handed alpha
Helix 18
18
D
158 172Right-handed alpha
Helix 19
19
E
65 72Right-handed alpha
Helix 20
20
E
73 80Right-handed 310
Helix 21
21
E
104 113Right-handed alpha
Helix 22
22
E
125 127Right-handed 310
Helix 23
23
E
187 196Right-handed alpha
Helix 24
24
F
37 59Right-handed alpha
Helix 25
25
F
74 127Right-handed alpha
Helix 26
26
F
145 155Right-handed alpha
Helix 27
27
F
158 173Right-handed alpha
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There are 33 sheets in PDB entry 3S11. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 36first strand
Strand 2
B
22 27anti-parallel
Strand 3
A
12 17anti-parallel
Strand 4
B
137 140anti-parallel
Strand 5
B
130 132anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
A
35 35anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
315 317anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
294 295parallel
Strand 3
A
307 308parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
274 279parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
87 89parallel
Strand 3
A
267 269parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
229 237parallel
Strand 3
A
176 184anti-parallel
Strand 4
A
256 263anti-parallel
Strand 5
A
115 122anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
229 237parallel
Strand 3
A
176 184anti-parallel
Strand 4
A
251 254anti-parallel
Strand 5
A
151 153anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 141first strand
Strand 2
A
144 146anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 169first strand
Strand 2
A
242 247anti-parallel
Strand 3
A
202 205anti-parallel
Strand 4
A
210 213anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 288first strand
Strand 2
A
281 283anti-parallel
Strand 3
A
302 303anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
34 36first strand
Strand 2
D
22 27anti-parallel
Strand 3
C
12 17anti-parallel
Strand 4
D
137 140anti-parallel
Strand 5
D
130 132anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 25first strand
Strand 2
C
35 35anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 41first strand
Strand 2
C
315 317anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 44first strand
Strand 2
C
294 295parallel
Strand 3
C
307 308parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 53first strand
Strand 2
C
274 279parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 60first strand
Strand 2
C
87 89parallel
Strand 3
C
267 269parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 102first strand
Strand 2
C
229 237parallel
Strand 3
C
176 184anti-parallel
Strand 4
C
256 263anti-parallel
Strand 5
C
115 122anti-parallel
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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 102first strand
Strand 2
C
229 237parallel
Strand 3
C
176 184anti-parallel
Strand 4
C
251 254anti-parallel
Strand 5
C
151 153anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
136 140first strand
Strand 2
C
145 146anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
164 169first strand
Strand 2
C
242 247anti-parallel
Strand 3
C
202 205anti-parallel
Strand 4
C
210 213anti-parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
286 288first strand
Strand 2
C
281 283anti-parallel
Strand 3
C
302 303anti-parallel
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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
32 36first strand
Strand 2
F
22 27anti-parallel
Strand 3
E
12 17anti-parallel
Strand 4
F
137 140anti-parallel
Strand 5
F
130 132anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
24 25first strand
Strand 2
E
35 35anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
39 41first strand
Strand 2
E
315 317anti-parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
43 44first strand
Strand 2
E
294 295parallel
Strand 3
E
307 308parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
51 53first strand
Strand 2
E
274 279parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
59 60first strand
Strand 2
E
87 89parallel
Strand 3
E
267 269parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
100 102first strand
Strand 2
E
229 237parallel
Strand 3
E
175 184anti-parallel
Strand 4
E
256 263anti-parallel
Strand 5
E
115 122anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
100 102first strand
Strand 2
E
229 237parallel
Strand 3
E
175 184anti-parallel
Strand 4
E
251 254anti-parallel
Strand 5
E
151 153anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
136 140first strand
Strand 2
E
145 146anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
164 169first strand
Strand 2
E
242 247anti-parallel
Strand 3
E
202 205anti-parallel
Strand 4
E
210 213anti-parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
286 288first strand
Strand 2
E
281 283anti-parallel
Strand 3
E
302 303anti-parallel
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