Analysis of interatomic Contacts of Structural Units in PDB entry:
3S1V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S1V entry

There are 5 chains in PDB entry 3S1V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1LEU 223
B
MET 1LEU 223
C
MET 1LEU 223
D
MET 1LEU 223
E
MET 1LEU 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 3S1V. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
9 19Right-handed alpha
Helix 2
2
A
28 36Right-handed alpha
Helix 3
3
A
41 53Right-handed alpha
Helix 4
4
A
65 79Right-handed alpha
Helix 5
5
A
90 103Right-handed alpha
Helix 6
6
A
114 124Right-handed alpha
Helix 7
7
A
132 139Right-handed alpha
Helix 8
8
A
143 157Right-handed alpha
Helix 9
9
A
170 181Right-handed alpha
Helix 10
10
A
188 195Right-handed alpha
Helix 11
11
A
198 216Right-handed alpha
Helix 12
12
B
9 20Right-handed alpha
Helix 13
13
B
28 36Right-handed alpha
Helix 14
14
B
41 53Right-handed alpha
Helix 15
15
B
65 78Right-handed alpha
Helix 16
16
B
90 103Right-handed alpha
Helix 17
17
B
114 124Right-handed alpha
Helix 18
18
B
132 139Right-handed alpha
Helix 19
19
B
143 158Right-handed alpha
Helix 20
20
B
170 181Right-handed alpha
Helix 21
21
B
188 195Right-handed alpha
Helix 22
22
B
198 214Right-handed alpha
Helix 23
23
C
9 18Right-handed alpha
Helix 24
24
C
28 36Right-handed alpha
Helix 25
25
C
41 53Right-handed alpha
Helix 26
26
C
65 79Right-handed alpha
Helix 27
27
C
90 103Right-handed alpha
Helix 28
28
C
114 124Right-handed alpha
Helix 29
29
C
132 139Right-handed alpha
Helix 30
30
C
143 157Right-handed alpha
Helix 31
31
C
170 181Right-handed alpha
Helix 32
32
C
188 196Right-handed alpha
Helix 33
33
C
198 216Right-handed alpha
Helix 34
34
D
9 19Right-handed alpha
Helix 35
35
D
28 36Right-handed alpha
Helix 36
36
D
41 53Right-handed alpha
Helix 37
37
D
65 78Right-handed alpha
Helix 38
38
D
90 103Right-handed alpha
Helix 39
39
D
114 124Right-handed alpha
Helix 40
40
D
132 139Right-handed alpha
Helix 41
41
D
142 157Right-handed alpha
Helix 42
42
D
170 181Right-handed alpha
Helix 43
43
D
188 195Right-handed alpha
Helix 44
44
D
198 214Right-handed alpha
Helix 45
45
E
9 19Right-handed alpha
Helix 46
46
E
28 36Right-handed alpha
Helix 47
47
E
41 53Right-handed alpha
Helix 48
48
E
65 79Right-handed alpha
Helix 49
49
E
90 103Right-handed alpha
Helix 50
50
E
114 124Right-handed alpha
Helix 51
51
E
132 139Right-handed alpha
Helix 52
52
E
143 157Right-handed alpha
Helix 53
53
E
170 181Right-handed alpha
Helix 54
54
E
188 195Right-handed alpha
Helix 55
55
E
198 216Right-handed alpha
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There are 5 sheets in PDB entry 3S1V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2 6first strand
Strand 2
A
24 26parallel
Strand 3
A
57 60parallel
Strand 4
A
83 88parallel
Strand 5
A
107 112parallel
Strand 6
A
128 131parallel
Strand 7
A
162 165parallel
Strand 8
A
184 187parallel
Strand 9
A
2 6parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2 6first strand
Strand 2
B
25 26parallel
Strand 3
B
57 60parallel
Strand 4
B
83 88parallel
Strand 5
B
107 112parallel
Strand 6
B
128 131parallel
Strand 7
B
162 165parallel
Strand 8
B
184 187parallel
Strand 9
B
2 6parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2 6first strand
Strand 2
C
24 26parallel
Strand 3
C
57 60parallel
Strand 4
C
83 88parallel
Strand 5
C
107 112parallel
Strand 6
C
128 131parallel
Strand 7
C
162 165parallel
Strand 8
C
184 187parallel
Strand 9
C
2 6parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
2 6first strand
Strand 2
D
25 26parallel
Strand 3
D
57 60parallel
Strand 4
D
83 88parallel
Strand 5
D
107 112parallel
Strand 6
D
128 131parallel
Strand 7
D
162 165parallel
Strand 8
D
184 187parallel
Strand 9
D
2 6parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
2 6first strand
Strand 2
E
25 26parallel
Strand 3
E
57 60parallel
Strand 4
E
83 88parallel
Strand 5
E
107 112parallel
Strand 6
E
128 131parallel
Strand 7
E
162 165parallel
Strand 8
E
184 187parallel
Strand 9
E
2 6parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il