Analysis of interatomic Contacts of Structural Units in PDB entry:
3S4D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S4D entry

There is 1 chain in PDB entry 3S4D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 822
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3S4D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 11Right-handed 310
Helix 2
2
A
156 163Right-handed alpha
Helix 3
3
A
163 168Right-handed alpha
Helix 4
4
A
213 219Right-handed alpha
Helix 5
5
A
227 233Right-handed alpha
Helix 6
6
A
288 293Right-handed alpha
Helix 7
7
A
293 298Right-handed alpha
Helix 8
8
A
300 319Right-handed alpha
Helix 9
9
A
328 337Right-handed alpha
Helix 10
10
A
337 350Right-handed alpha
Helix 11
11
A
366 375Right-handed alpha
Helix 12
12
A
380 393Right-handed alpha
Helix 13
13
A
422 439Right-handed alpha
Helix 14
14
A
441 446Right-handed alpha
Helix 15
15
A
460 474Right-handed alpha
Helix 16
16
A
519 536Right-handed alpha
Helix 17
17
A
543 562Right-handed alpha
Helix 18
18
A
592 601Right-handed alpha
Helix 19
19
A
614 626Right-handed alpha
Helix 20
20
A
648 653Right-handed 310
Helix 21
21
A
666 679Right-handed alpha
Helix 22
22
A
680 689Right-handed alpha
Helix 23
23
A
693 698Right-handed 310
Helix 24
24
A
699 704Right-handed alpha
Helix 25
25
A
732 744Right-handed alpha
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There are 12 sheets in PDB entry 3S4D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
12 15anti-parallel
Strand 3
A
94 99anti-parallel
Strand 4
A
103 110anti-parallel
Strand 5
A
113 120anti-parallel
Strand 6
A
135 136anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
12 15anti-parallel
Strand 3
A
94 99anti-parallel
Strand 4
A
103 110anti-parallel
Strand 5
A
113 120anti-parallel
Strand 6
A
127 132anti-parallel
Strand 7
A
263 271anti-parallel
Strand 8
A
197 203anti-parallel
Strand 9
A
182 185anti-parallel
Strand 10
A
175 179anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
33 38anti-parallel
Strand 3
A
43 47anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
152 155anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
71 76anti-parallel
Strand 3
A
142 149anti-parallel
Strand 4
A
248 255anti-parallel
Strand 5
A
209 211anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 326first strand
Strand 2
A
767 774anti-parallel
Strand 3
A
777 784anti-parallel
Strand 4
A
815 821parallel
Strand 5
A
794 797anti-parallel
Strand 6
A
800 802anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 365first strand
Strand 2
A
404 406anti-parallel
Strand 3
A
411 413anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 450first strand
Strand 2
A
453 459anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
517 518first strand
Strand 2
A
572 573anti-parallel
Strand 3
A
579 580anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 591first strand
Strand 2
A
636 637anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
628 629first strand
Strand 2
A
632 633anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
748 750first strand
Strand 2
A
754 757anti-parallel
Strand 3
A
806 808anti-parallel
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