Analysis of interatomic Contacts of Structural Units in PDB entry:
3S5K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S5K entry

There is 1 chain in PDB entry 3S5K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 60GLU 1193
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 3S5K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
126 136Right-handed alpha
Helix 2
2
A
148 154Right-handed alpha
Helix 3
3
A
177 194Right-handed alpha
Helix 4
4
A
201 208Right-handed alpha
Helix 5
5
A
238 249Right-handed alpha
Helix 6
6
A
252 262Right-handed alpha
Helix 7
7
A
276 281Right-handed alpha
Helix 8
8
A
284 296Right-handed alpha
Helix 9
9
A
310 322Right-handed alpha
Helix 10
10
A
409 425Right-handed alpha
Helix 11
11
A
431 438Right-handed alpha
Helix 12
12
A
477 496Right-handed alpha
Helix 13
13
A
502 517Right-handed alpha
Helix 14
14
A
518 520Right-handed 310
Helix 15
15
A
523 536Right-handed alpha
Helix 16
16
A
542 546Right-handed 310
Helix 17
17
A
551 560Right-handed alpha
Helix 18
18
A
565 573Right-handed alpha
Helix 19
19
A
589 606Right-handed alpha
Helix 20
20
A
616 626Right-handed alpha
Helix 21
21
A
633 638Right-handed alpha
Helix 22
22
A
644 648Right-handed 310
Helix 23
23
A
663 667Right-handed 310
Helix 24
24
A
669 680Right-handed alpha
Helix 25
25
A
682 696Right-handed alpha
Helix 26
26
A
752 758Right-handed alpha
Helix 27
27
A
758 766Right-handed alpha
Helix 28
28
A
767 769Right-handed 310
Helix 29
29
A
775 787Right-handed alpha
Helix 30
30
A
825 839Right-handed alpha
Helix 31
31
A
844 862Right-handed alpha
Helix 32
32
A
866 875Right-handed alpha
Helix 33
33
A
876 879Right-handed 310
Helix 34
34
A
880 891Right-handed alpha
Helix 35
35
A
891 908Right-handed alpha
Helix 36
36
A
908 924Right-handed alpha
Helix 37
37
A
936 945Right-handed alpha
Helix 38
38
A
947 959Right-handed alpha
Helix 39
39
A
960 965Right-handed 310
Helix 40
40
A
979 987Right-handed alpha
Helix 41
41
A
1025 1036Right-handed alpha
Helix 42
42
A
1036 1043Right-handed alpha
Helix 43
43
A
1071 1080Right-handed alpha
Helix 44
44
A
1080 1092Right-handed alpha
Helix 45
45
A
1093 1109Right-handed alpha
Helix 46
46
A
1114 1128Right-handed alpha
Helix 47
47
A
1130 1142Right-handed alpha
Helix 48
48
A
1146 1159Right-handed alpha
Helix 49
49
A
1162 1164Right-handed 310
Helix 50
50
A
1172 1182Right-handed alpha
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There are 6 sheets in PDB entry 3S5K. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 76first strand
Strand 2
A
84 91anti-parallel
Strand 3
A
97 103anti-parallel
Strand 4
A
302 306parallel
Strand 5
A
111 118anti-parallel
Strand 6
A
168 175anti-parallel
Strand 7
A
163 164anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
A
236 237anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 354first strand
Strand 2
A
580 586parallel
Strand 3
A
364 370anti-parallel
Strand 4
A
457 462anti-parallel
Strand 5
A
448 450anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
658 662first strand
Strand 2
A
727 733anti-parallel
Strand 3
A
929 935parallel
Strand 4
A
739 747anti-parallel
Strand 5
A
812 822anti-parallel
Strand 6
A
789 797anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1166 1171first strand
Strand 2
A
996 1001parallel
Strand 3
A
1188 1191parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1007 1014first strand
Strand 2
A
1060 1068anti-parallel
Strand 3
A
1050 1054anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il