Analysis of interatomic Contacts of Structural Units in PDB entry:
3S5P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S5P entry

There are 2 chains in PDB entry 3S5P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -2LYS 139
B
 PRO -2GLU 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 3S5P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 25Right-handed alpha
Helix 2
2
A
43 55Right-handed alpha
Helix 3
3
A
68 77Right-handed alpha
Helix 4
4
A
88 98Right-handed alpha
Helix 5
5
A
112 126Right-handed alpha
Helix 6
6
A
129 135Right-handed alpha
Helix 7
7
B
11 25Right-handed alpha
Helix 8
8
B
43 55Right-handed alpha
Helix 9
9
B
68 77Right-handed alpha
Helix 10
10
B
88 98Right-handed alpha
Helix 11
11
B
112 126Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3S5P. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 33first strand
Strand 2
A
2 7parallel
Strand 3
A
60 65parallel
Strand 4
A
103 107parallel
Strand 5
A
83 85parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 34first strand
Strand 2
B
2 7parallel
Strand 3
B
60 65parallel
Strand 4
B
103 107parallel
Strand 5
B
83 85parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il