Analysis of interatomic Contacts of Structural Units in PDB entry:
3S5S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S5S entry

There are 2 chains in PDB entry 3S5S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2PHE 373
B
 THR 3GLN 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3S5S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 60Right-handed alpha
Helix 2
2
A
62 73Right-handed alpha
Helix 3
3
A
73 78Right-handed alpha
Helix 4
4
A
81 83Right-handed 310
Helix 5
5
A
84 97Right-handed alpha
Helix 6
6
A
100 118Right-handed alpha
Helix 7
7
A
122 127Right-handed alpha
Helix 8
8
A
145 159Right-handed alpha
Helix 9
9
A
168 172Right-handed 310
Helix 10
10
A
174 186Right-handed alpha
Helix 11
11
A
200 214Right-handed alpha
Helix 12
12
A
229 240Right-handed alpha
Helix 13
13
A
252 262Right-handed alpha
Helix 14
14
A
271 290Right-handed alpha
Helix 15
15
A
302 317Right-handed alpha
Helix 16
16
A
325 330Right-handed 310
Helix 17
17
B
55 60Right-handed alpha
Helix 18
18
B
62 74Right-handed alpha
Helix 19
19
B
81 83Right-handed 310
Helix 20
20
B
84 96Right-handed alpha
Helix 21
21
B
100 119Right-handed alpha
Helix 22
22
B
122 127Right-handed alpha
Helix 23
23
B
144 158Right-handed alpha
Helix 24
24
B
171 173Right-handed 310
Helix 25
25
B
174 186Right-handed alpha
Helix 26
26
B
200 215Right-handed alpha
Helix 27
27
B
229 240Right-handed alpha
Helix 28
28
B
252 263Right-handed alpha
Helix 29
29
B
271 276Right-handed alpha
Helix 30
30
B
276 290Right-handed alpha
Helix 31
31
B
302 317Right-handed alpha
Helix 32
32
B
325 330Right-handed 310
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There are 8 sheets in PDB entry 3S5S. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 52first strand
Strand 2
A
28 42anti-parallel
Strand 3
A
7 25anti-parallel
Strand 4
A
369 372anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
345 347anti-parallel
Strand 3
A
340 342anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
162 166parallel
Strand 3
A
190 194parallel
Strand 4
A
217 222parallel
Strand 5
A
244 246parallel
Strand 6
A
267 270parallel
Strand 7
A
293 296parallel
Strand 8
A
319 322parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 336first strand
Strand 2
A
358 359anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 18first strand
Strand 2
B
32 42anti-parallel
Strand 3
B
47 52anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 135first strand
Strand 2
B
345 347anti-parallel
Strand 3
B
340 342anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 140first strand
Strand 2
B
162 166parallel
Strand 3
B
190 194parallel
Strand 4
B
217 222parallel
Strand 5
B
243 246parallel
Strand 6
B
267 270parallel
Strand 7
B
293 296parallel
Strand 8
B
321 322parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 336first strand
Strand 2
B
358 359anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il