Analysis of interatomic Contacts of Structural Units in PDB entry:
3S6B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S6B entry

There is 1 chain in PDB entry 3S6B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 23TYR 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3S6B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 32Right-handed alpha
Helix 2
2
A
42 48Right-handed 310
Helix 3
3
A
50 55Right-handed 310
Helix 4
4
A
89 94Right-handed alpha
Helix 5
5
A
105 129Right-handed alpha
Helix 6
6
A
135 150Right-handed alpha
Helix 7
7
A
158 162Right-handed 310
Helix 8
8
A
213 217Right-handed 310
Helix 9
9
A
218 239Right-handed alpha
Helix 10
10
A
246 258Right-handed alpha
Helix 11
11
A
362 366Right-handed 310
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There are 6 sheets in PDB entry 3S6B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
189 198anti-parallel
Strand 3
A
167 170anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
189 198anti-parallel
Strand 3
A
201 210anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 175first strand
Strand 2
A
322 324anti-parallel
Strand 3
A
313 315anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
305 307anti-parallel
Strand 3
A
330 332anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 271first strand
Strand 2
A
278 282anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 302first strand
Strand 2
A
335 340anti-parallel
Strand 3
A
343 346anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il