Analysis of interatomic Contacts of Structural Units in PDB entry:
3S6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S6J entry

There are 6 chains in PDB entry 3S6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 106SER 325
B
 GLN 107SER 325
C
 GLN 107SER 325
D
 GLN 107SER 325
E
 PRO 106SER 325
F
 GLN 107SER 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 91 helices in PDB entry 3S6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
121 136Right-handed alpha
Helix 2
2
A
141 149Right-handed alpha
Helix 3
3
A
152 163Right-handed alpha
Helix 4
4
A
169 187Right-handed alpha
Helix 5
5
A
188 191Right-handed 310
Helix 6
6
A
196 207Right-handed alpha
Helix 7
7
A
218 228Right-handed alpha
Helix 8
8
A
240 244Right-handed 310
Helix 9
9
A
251 261Right-handed alpha
Helix 10
10
A
264 266Right-handed 310
Helix 11
11
A
274 284Right-handed alpha
Helix 12
12
A
293 295Right-handed 310
Helix 13
13
A
297 304Right-handed alpha
Helix 14
14
A
312 319Right-handed alpha
Helix 15
15
A
320 323Right-handed 310
Helix 16
16
B
121 135Right-handed alpha
Helix 17
17
B
141 147Right-handed alpha
Helix 18
18
B
171 187Right-handed alpha
Helix 19
19
B
188 191Right-handed 310
Helix 20
20
B
196 207Right-handed alpha
Helix 21
21
B
218 229Right-handed alpha
Helix 22
22
B
240 244Right-handed 310
Helix 23
23
B
251 261Right-handed alpha
Helix 24
24
B
264 266Right-handed 310
Helix 25
25
B
274 284Right-handed alpha
Helix 26
26
B
293 295Right-handed 310
Helix 27
27
B
297 304Right-handed alpha
Helix 28
28
B
312 319Right-handed alpha
Helix 29
29
B
319 324Right-handed alpha
Helix 30
30
C
121 136Right-handed alpha
Helix 31
31
C
141 147Right-handed alpha
Helix 32
32
C
169 186Right-handed alpha
Helix 33
33
C
187 191Right-handed 310
Helix 34
34
C
196 207Right-handed alpha
Helix 35
35
C
218 229Right-handed alpha
Helix 36
36
C
232 236Right-handed 310
Helix 37
37
C
240 244Right-handed 310
Helix 38
38
C
251 261Right-handed alpha
Helix 39
39
C
264 266Right-handed 310
Helix 40
40
C
274 284Right-handed alpha
Helix 41
41
C
293 295Right-handed 310
Helix 42
42
C
297 304Right-handed alpha
Helix 43
43
C
312 318Right-handed alpha
Helix 44
44
C
319 323Right-handed 310
Helix 45
45
D
121 136Right-handed alpha
Helix 46
46
D
141 147Right-handed alpha
Helix 47
47
D
152 164Right-handed alpha
Helix 48
48
D
169 187Right-handed alpha
Helix 49
49
D
188 191Right-handed 310
Helix 50
50
D
196 207Right-handed alpha
Helix 51
51
D
218 228Right-handed alpha
Helix 52
52
D
240 244Right-handed 310
Helix 53
53
D
251 261Right-handed alpha
Helix 54
54
D
264 266Right-handed 310
Helix 55
55
D
274 284Right-handed alpha
Helix 56
56
D
293 295Right-handed 310
Helix 57
57
D
297 304Right-handed alpha
Helix 58
58
D
312 319Right-handed alpha
Helix 59
59
D
319 324Right-handed alpha
Helix 60
60
E
121 136Right-handed alpha
Helix 61
61
E
141 149Right-handed alpha
Helix 62
62
E
152 164Right-handed alpha
Helix 63
63
E
169 187Right-handed alpha
Helix 64
64
E
188 191Right-handed 310
Helix 65
65
E
196 207Right-handed alpha
Helix 66
66
E
218 229Right-handed alpha
Helix 67
67
E
232 236Right-handed 310
Helix 68
68
E
240 244Right-handed 310
Helix 69
69
E
251 262Right-handed alpha
Helix 70
70
E
264 266Right-handed 310
Helix 71
71
E
274 284Right-handed alpha
Helix 72
72
E
293 295Right-handed 310
Helix 73
73
E
297 304Right-handed alpha
Helix 74
74
E
312 319Right-handed alpha
Helix 75
75
E
319 324Right-handed alpha
Helix 76
76
F
121 136Right-handed alpha
Helix 77
77
F
141 147Right-handed alpha
Helix 78
78
F
152 164Right-handed alpha
Helix 79
79
F
169 187Right-handed alpha
Helix 80
80
F
188 191Right-handed 310
Helix 81
81
F
196 207Right-handed alpha
Helix 82
82
F
218 229Right-handed alpha
Helix 83
83
F
232 236Right-handed 310
Helix 84
84
F
240 244Right-handed 310
Helix 85
85
F
251 261Right-handed alpha
Helix 86
86
F
264 266Right-handed 310
Helix 87
87
F
274 284Right-handed alpha
Helix 88
88
F
293 295Right-handed 310
Helix 89
89
F
297 304Right-handed alpha
Helix 90
90
F
312 318Right-handed alpha
Helix 91
91
F
319 324Right-handed alpha
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There are 12 sheets in PDB entry 3S6J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
211 214parallel
Strand 3
A
109 112parallel
Strand 4
A
268 272parallel
Strand 5
A
287 291parallel
Strand 6
A
308 310parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
192 193anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 239first strand
Strand 2
B
211 214parallel
Strand 3
B
109 112parallel
Strand 4
B
268 272parallel
Strand 5
B
287 291parallel
Strand 6
B
308 310parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 120first strand
Strand 2
B
192 193anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 239first strand
Strand 2
C
211 214parallel
Strand 3
C
109 112parallel
Strand 4
C
268 272parallel
Strand 5
C
287 291parallel
Strand 6
C
308 310parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 120first strand
Strand 2
C
192 193anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
238 239first strand
Strand 2
D
211 214parallel
Strand 3
D
109 112parallel
Strand 4
D
268 272parallel
Strand 5
D
287 291parallel
Strand 6
D
306 310parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
119 120first strand
Strand 2
D
192 193anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
238 239first strand
Strand 2
E
211 214parallel
Strand 3
E
109 112parallel
Strand 4
E
268 272parallel
Strand 5
E
287 291parallel
Strand 6
E
308 310parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
119 120first strand
Strand 2
E
192 193anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
238 239first strand
Strand 2
F
211 214parallel
Strand 3
F
109 112parallel
Strand 4
F
268 272parallel
Strand 5
F
287 291parallel
Strand 6
F
308 310parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
119 120first strand
Strand 2
F
192 193anti-parallel
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