Analysis of interatomic Contacts of Structural Units in PDB entry:
3S6L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S6L entry

There are 5 chains in PDB entry 3S6L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 11SER 165
B
 VAL 11VAL 163
C
 VAL 11SER 165
D
 VAL 11ASP 168
E
 VAL 11SER 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 3S6L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
156 164Right-handed alpha
Helix 2
2
B
156 162Right-handed alpha
Helix 3
3
C
156 164Right-handed alpha
Helix 4
4
D
156 168Right-handed alpha
Helix 5
5
E
156 166Right-handed alpha
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There are 15 sheets in PDB entry 3S6L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
19 21anti-parallel
Strand 3
A
33 35parallel
Strand 4
A
47 49parallel
Strand 5
A
61 63parallel
Strand 6
A
75 77parallel
Strand 7
A
89 91parallel
Strand 8
A
103 105parallel
Strand 9
A
117 119parallel
Strand 10
A
130 132parallel
Strand 11
B
141 143parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
40 41parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
110 111parallel
Strand 3
A
124 125parallel
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There are 11 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
C
130 132parallel
Strand 3
C
117 119parallel
Strand 4
C
103 105parallel
Strand 5
C
89 91parallel
Strand 6
C
75 77parallel
Strand 7
C
61 63parallel
Strand 8
C
47 49parallel
Strand 9
C
33 35parallel
Strand 10
C
19 21parallel
Strand 11
C
12 13anti-parallel
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There are 11 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
19 21anti-parallel
Strand 3
B
33 35parallel
Strand 4
B
47 49parallel
Strand 5
B
61 63parallel
Strand 6
B
75 77parallel
Strand 7
B
89 91parallel
Strand 8
B
103 105parallel
Strand 9
B
117 119parallel
Strand 10
B
130 132parallel
Strand 11
C
141 143parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 27first strand
Strand 2
B
40 41parallel
Strand 3
B
54 55parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 97first strand
Strand 2
B
110 111parallel
Strand 3
B
124 125parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 27first strand
Strand 2
C
40 41parallel
Strand 3
C
54 55parallel
Strand 4
C
68 69parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 97first strand
Strand 2
C
110 111parallel
Strand 3
C
124 125parallel
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There are 10 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 13first strand
Strand 2
D
19 21anti-parallel
Strand 3
D
33 35parallel
Strand 4
D
47 49parallel
Strand 5
D
61 63parallel
Strand 6
D
75 77parallel
Strand 7
D
89 91parallel
Strand 8
D
103 105parallel
Strand 9
D
117 119parallel
Strand 10
D
131 132parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
26 27first strand
Strand 2
D
40 41parallel
Strand 3
D
54 55parallel
Strand 4
D
68 69parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
96 97first strand
Strand 2
D
110 111parallel
Strand 3
D
124 125parallel
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There are 10 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 13first strand
Strand 2
E
19 21anti-parallel
Strand 3
E
33 35parallel
Strand 4
E
47 49parallel
Strand 5
E
61 63parallel
Strand 6
E
75 77parallel
Strand 7
E
89 91parallel
Strand 8
E
103 105parallel
Strand 9
E
117 119parallel
Strand 10
E
131 132parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
26 27first strand
Strand 2
E
40 41parallel
Strand 3
E
54 55parallel
Strand 4
E
68 69parallel
Strand 5
E
82 83parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
96 97first strand
Strand 2
E
110 111parallel
Strand 3
E
124 125parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il