Analysis of interatomic Contacts of Structural Units in PDB entry:
3S7Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S7Y entry

There are 2 chains in PDB entry 3S7Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5PRO 440
X
 ALA 5ALA 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 3S7Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 17Right-handed alpha
Helix 2
2
A
25 32Right-handed alpha
Helix 3
3
A
37 39Right-handed 310
Helix 4
4
A
46 53Right-handed alpha
Helix 5
5
A
53 68Right-handed alpha
Helix 6
6
A
77 89Right-handed alpha
Helix 7
7
A
102 104Right-handed 310
Helix 8
8
A
105 127Right-handed alpha
Helix 9
9
A
160 168Right-handed alpha
Helix 10
10
A
190 203Right-handed alpha
Helix 11
11
A
229 238Right-handed alpha
Helix 12
12
A
243 259Right-handed alpha
Helix 13
13
A
270 272Right-handed 310
Helix 14
14
A
273 279Right-handed alpha
Helix 15
15
A
299 303Right-handed 310
Helix 16
16
A
304 316Right-handed alpha
Helix 17
17
A
323 328Right-handed alpha
Helix 18
18
A
360 367Right-handed alpha
Helix 19
19
A
368 380Right-handed alpha
Helix 20
20
A
393 401Right-handed alpha
Helix 21
21
A
419 433Right-handed alpha
Helix 22
22
X
5 11Right-handed alpha
Helix 23
23
X
19 21Right-handed 310
Helix 24
24
X
22 31Right-handed alpha
Helix 25
25
X
46 53Right-handed alpha
Helix 26
26
X
53 68Right-handed alpha
Helix 27
27
X
77 83Right-handed alpha
Helix 28
28
X
83 88Right-handed alpha
Helix 29
29
X
102 104Right-handed 310
Helix 30
30
X
105 127Right-handed alpha
Helix 31
31
X
160 168Right-handed alpha
Helix 32
32
X
190 203Right-handed alpha
Helix 33
33
X
229 238Right-handed alpha
Helix 34
34
X
243 259Right-handed alpha
Helix 35
35
X
270 272Right-handed 310
Helix 36
36
X
273 279Right-handed alpha
Helix 37
37
X
299 303Right-handed 310
Helix 38
38
X
304 316Right-handed alpha
Helix 39
39
X
323 328Right-handed alpha
Helix 40
40
X
360 367Right-handed alpha
Helix 41
41
X
368 380Right-handed alpha
Helix 42
42
X
393 401Right-handed alpha
Helix 43
43
X
419 433Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 3S7Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
172 176parallel
Strand 3
A
71 75parallel
Strand 4
A
41 45parallel
Strand 5
A
206 210parallel
Strand 6
A
268 269parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 158first strand
Strand 2
A
139 142anti-parallel
Strand 3
A
178 180parallel
Strand 4
A
186 188anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
288 289parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 295first strand
Strand 2
A
332 336anti-parallel
Strand 3
A
341 346anti-parallel
Strand 4
A
353 359anti-parallel
Strand 5
A
383 388parallel
Strand 6
A
410 415anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
131 132first strand
Strand 2
X
172 176parallel
Strand 3
X
71 75parallel
Strand 4
X
41 43parallel
Strand 5
X
206 207parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
154 158first strand
Strand 2
X
139 142anti-parallel
Strand 3
X
178 180parallel
Strand 4
X
186 188anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
209 210first strand
Strand 2
X
268 269parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
227 228first strand
Strand 2
X
288 289parallel
Back to list of sheets
Back to top of page

There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
294 297first strand
Strand 2
X
332 336anti-parallel
Strand 3
X
341 346anti-parallel
Strand 4
X
353 359anti-parallel
Strand 5
X
383 388parallel
Strand 6
X
410 415anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il