Analysis of interatomic Contacts of Structural Units in PDB entry:
3S86


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S86 entry

There are 4 chains in PDB entry 3S86 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LEU 191
B
 LYS 3LEU 191
C
 LYS 3LEU 191
D
 LYS 3LEU 191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 3S86. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 21Right-handed alpha
Helix 2
2
A
44 61Right-handed alpha
Helix 3
3
A
75 77Right-handed 310
Helix 4
4
A
80 84Right-handed 310
Helix 5
5
A
92 104Right-handed alpha
Helix 6
6
A
150 152Right-handed 310
Helix 7
7
A
168 174Right-handed alpha
Helix 8
8
A
174 190Right-handed alpha
Helix 9
9
B
12 22Right-handed alpha
Helix 10
10
B
44 61Right-handed alpha
Helix 11
11
B
75 77Right-handed 310
Helix 12
12
B
80 84Right-handed 310
Helix 13
13
B
92 104Right-handed alpha
Helix 14
14
B
150 152Right-handed 310
Helix 15
15
B
166 168Right-handed 310
Helix 16
16
B
169 174Right-handed alpha
Helix 17
17
B
174 190Right-handed alpha
Helix 18
18
C
12 21Right-handed alpha
Helix 19
19
C
44 61Right-handed alpha
Helix 20
20
C
75 77Right-handed 310
Helix 21
21
C
80 84Right-handed 310
Helix 22
22
C
92 105Right-handed alpha
Helix 23
23
C
150 152Right-handed 310
Helix 24
24
C
166 168Right-handed 310
Helix 25
25
C
169 174Right-handed alpha
Helix 26
26
C
174 188Right-handed alpha
Helix 27
27
D
12 23Right-handed alpha
Helix 28
28
D
44 61Right-handed alpha
Helix 29
29
D
75 77Right-handed 310
Helix 30
30
D
80 84Right-handed 310
Helix 31
31
D
92 105Right-handed alpha
Helix 32
32
D
150 152Right-handed 310
Helix 33
33
D
166 168Right-handed 310
Helix 34
34
D
169 174Right-handed alpha
Helix 35
35
D
174 190Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3S86. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
4 8parallel
Strand 3
A
64 73parallel
Strand 4
A
110 121anti-parallel
Strand 5
A
126 138anti-parallel
Strand 6
D
126 138anti-parallel
Strand 7
D
110 121anti-parallel
Strand 8
D
64 73anti-parallel
Strand 9
D
4 8parallel
Strand 10
D
27 31parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
126 138anti-parallel
Strand 3
D
126 138anti-parallel
Strand 4
D
154 156anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 31first strand
Strand 2
B
4 8parallel
Strand 3
B
64 73parallel
Strand 4
B
110 121anti-parallel
Strand 5
B
126 138anti-parallel
Strand 6
C
126 138anti-parallel
Strand 7
C
110 121anti-parallel
Strand 8
C
64 73anti-parallel
Strand 9
C
4 8parallel
Strand 10
C
27 31parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 156first strand
Strand 2
B
126 138anti-parallel
Strand 3
C
126 138anti-parallel
Strand 4
C
154 156anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il