Analysis of interatomic Contacts of Structural Units in PDB entry:
3S8A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3S8A entry

There is 1 chain in PDB entry 3S8A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 76GLN 746
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3S8A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
81 87Right-handed alpha
Helix 2
2
A
93 103Right-handed alpha
Helix 3
3
A
117 126Right-handed alpha
Helix 4
4
A
127 133Right-handed alpha
Helix 5
5
A
136 143Right-handed 310
Helix 6
6
A
144 155Right-handed alpha
Helix 7
7
A
166 180Right-handed alpha
Helix 8
8
A
182 195Right-handed alpha
Helix 9
9
A
201 208Right-handed alpha
Helix 10
10
A
227 243Right-handed alpha
Helix 11
11
A
263 266Right-handed 310
Helix 12
12
A
272 286Right-handed alpha
Helix 13
13
A
307 313Right-handed alpha
Helix 14
14
A
314 316Right-handed 310
Helix 15
15
A
320 324Right-handed 310
Helix 16
16
A
335 344Right-handed alpha
Helix 17
17
A
363 377Right-handed alpha
Helix 18
18
A
385 400Right-handed alpha
Helix 19
19
A
407 413Right-handed alpha
Helix 20
20
A
416 420Right-handed 310
Helix 21
21
A
466 488Right-handed alpha
Helix 22
22
A
492 503Right-handed alpha
Helix 23
23
A
511 520Right-handed alpha
Helix 24
24
A
525 555Right-handed alpha
Helix 25
25
A
572 576Right-handed 310
Helix 26
26
A
584 596Right-handed alpha
Helix 27
27
A
608 616Right-handed alpha
Helix 28
28
A
642 652Right-handed alpha
Helix 29
29
A
657 665Right-handed alpha
Helix 30
30
A
677 684Right-handed alpha
Helix 31
31
A
691 703Right-handed alpha
Helix 32
32
A
704 706Right-handed 310
Helix 33
33
A
720 734Right-handed alpha
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There are 7 sheets in PDB entry 3S8A. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
445 449anti-parallel
Strand 3
A
506 510parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 443first strand
Strand 2
A
218 222anti-parallel
Strand 3
A
248 251parallel
Strand 4
A
297 301parallel
Strand 5
A
328 334parallel
Strand 6
A
403 406parallel
Strand 7
A
738 740anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
267 268anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 350first strand
Strand 2
A
381 384anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 456first strand
Strand 2
A
463 465anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
628 629first strand
Strand 2
A
640 641anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
714 715first strand
Strand 2
A
743 744parallel
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